Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06515

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06510 and AO356_06515 are separated by 377 nucleotidesAO356_06515 and AO356_06520 are separated by 396 nucleotides AO356_06510: AO356_06510 - TetR family transcriptional regulator, at 1,440,330 to 1,440,959 _06510 AO356_06515: AO356_06515 - hypothetical protein, at 1,441,337 to 1,442,617 _06515 AO356_06520: AO356_06520 - GMP synthase, at 1,443,014 to 1,444,591 _06520 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -2 -1 0 1 2at 1440.380 kb on - strandat 1440.472 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.490 kb on - strand, within AO356_06510at 1440.490 kb on - strand, within AO356_06510at 1440.490 kb on - strand, within AO356_06510at 1440.570 kb on - strand, within AO356_06510at 1440.570 kb on - strand, within AO356_06510at 1440.735 kb on + strand, within AO356_06510at 1440.735 kb on + strand, within AO356_06510at 1440.735 kb on + strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.859 kb on + strand, within AO356_06510at 1440.912 kb on + strandat 1440.912 kb on + strandat 1440.912 kb on + strandat 1440.913 kb on - strandat 1440.913 kb on - strandat 1440.913 kb on - strandat 1440.913 kb on - strandat 1441.053 kb on + strandat 1441.069 kb on + strandat 1441.069 kb on + strandat 1441.095 kb on + strandat 1441.096 kb on - strandat 1441.096 kb on - strandat 1441.121 kb on + strandat 1441.196 kb on + strandat 1441.196 kb on + strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.406 kb on - strandat 1441.406 kb on - strandat 1441.462 kb on + strandat 1441.462 kb on + strandat 1441.463 kb on - strandat 1441.463 kb on - strandat 1441.463 kb on - strandat 1441.463 kb on - strandat 1441.463 kb on - strandat 1441.463 kb on - strandat 1441.463 kb on - strandat 1441.492 kb on + strand, within AO356_06515at 1441.523 kb on + strand, within AO356_06515at 1441.523 kb on + strand, within AO356_06515at 1441.524 kb on - strand, within AO356_06515at 1441.524 kb on - strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.529 kb on + strand, within AO356_06515at 1441.530 kb on - strand, within AO356_06515at 1441.530 kb on - strand, within AO356_06515at 1441.530 kb on - strand, within AO356_06515at 1441.530 kb on - strand, within AO356_06515at 1441.530 kb on - strand, within AO356_06515at 1441.530 kb on - strand, within AO356_06515at 1441.530 kb on - strand, within AO356_06515at 1441.535 kb on + strand, within AO356_06515at 1441.535 kb on + strand, within AO356_06515at 1441.536 kb on - strand, within AO356_06515at 1441.538 kb on - strand, within AO356_06515at 1441.545 kb on + strand, within AO356_06515at 1441.545 kb on + strand, within AO356_06515at 1441.545 kb on + strand, within AO356_06515at 1441.546 kb on - strand, within AO356_06515at 1441.905 kb on + strand, within AO356_06515at 1441.906 kb on - strand, within AO356_06515at 1441.917 kb on + strand, within AO356_06515at 1441.917 kb on + strand, within AO356_06515at 1441.917 kb on + strand, within AO356_06515at 1441.918 kb on - strand, within AO356_06515at 1441.918 kb on - strand, within AO356_06515at 1441.918 kb on - strand, within AO356_06515at 1441.960 kb on + strand, within AO356_06515at 1441.961 kb on - strand, within AO356_06515at 1441.976 kb on - strand, within AO356_06515at 1442.062 kb on + strand, within AO356_06515at 1442.062 kb on + strand, within AO356_06515at 1442.062 kb on + strand, within AO356_06515at 1442.063 kb on - strand, within AO356_06515at 1442.063 kb on - strand, within AO356_06515at 1442.063 kb on - strand, within AO356_06515at 1442.063 kb on - strand, within AO356_06515at 1442.066 kb on + strand, within AO356_06515at 1442.066 kb on + strand, within AO356_06515at 1442.066 kb on + strand, within AO356_06515at 1442.067 kb on - strand, within AO356_06515at 1442.067 kb on - strand, within AO356_06515at 1442.086 kb on - strand, within AO356_06515at 1442.086 kb on - strand, within AO356_06515at 1442.086 kb on - strand, within AO356_06515at 1442.086 kb on - strand, within AO356_06515at 1442.137 kb on - strand, within AO356_06515at 1442.190 kb on + strand, within AO356_06515at 1442.190 kb on + strand, within AO356_06515at 1442.190 kb on + strand, within AO356_06515at 1442.191 kb on - strand, within AO356_06515at 1442.191 kb on - strand, within AO356_06515at 1442.196 kb on + strand, within AO356_06515at 1442.197 kb on - strand, within AO356_06515at 1442.242 kb on + strand, within AO356_06515at 1442.242 kb on + strand, within AO356_06515at 1442.243 kb on - strand, within AO356_06515at 1442.293 kb on + strand, within AO356_06515at 1442.302 kb on + strand, within AO356_06515at 1442.303 kb on - strand, within AO356_06515at 1442.337 kb on - strand, within AO356_06515at 1442.337 kb on - strand, within AO356_06515at 1442.337 kb on - strand, within AO356_06515at 1442.341 kb on + strand, within AO356_06515at 1442.341 kb on + strand, within AO356_06515at 1442.362 kb on - strand, within AO356_06515at 1442.362 kb on - strand, within AO356_06515at 1442.374 kb on + strand, within AO356_06515at 1442.374 kb on + strand, within AO356_06515at 1442.374 kb on + strand, within AO356_06515at 1442.374 kb on + strand, within AO356_06515at 1442.374 kb on + strand, within AO356_06515at 1442.374 kb on + strand, within AO356_06515at 1442.374 kb on + strand, within AO356_06515at 1442.375 kb on - strand, within AO356_06515at 1442.375 kb on - strand, within AO356_06515at 1442.449 kb on + strand, within AO356_06515at 1442.449 kb on + strand, within AO356_06515at 1442.450 kb on - strand, within AO356_06515at 1442.450 kb on - strand, within AO356_06515at 1442.450 kb on - strand, within AO356_06515at 1442.450 kb on - strand, within AO356_06515at 1442.450 kb on - strand, within AO356_06515at 1442.451 kb on + strand, within AO356_06515at 1442.451 kb on + strand, within AO356_06515at 1442.451 kb on + strand, within AO356_06515at 1442.451 kb on + strand, within AO356_06515at 1442.451 kb on + strand, within AO356_06515at 1442.451 kb on + strand, within AO356_06515at 1442.452 kb on - strand, within AO356_06515at 1442.452 kb on - strand, within AO356_06515at 1442.452 kb on - strand, within AO356_06515at 1442.452 kb on - strand, within AO356_06515at 1442.483 kb on + strand, within AO356_06515at 1442.483 kb on + strand, within AO356_06515at 1442.483 kb on + strand, within AO356_06515at 1442.483 kb on + strand, within AO356_06515at 1442.483 kb on + strand, within AO356_06515at 1442.483 kb on + strand, within AO356_06515at 1442.484 kb on - strand, within AO356_06515at 1442.484 kb on - strand, within AO356_06515at 1442.484 kb on - strand, within AO356_06515at 1442.484 kb on - strand, within AO356_06515at 1442.484 kb on - strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.487 kb on + strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.488 kb on - strand, within AO356_06515at 1442.489 kb on + strand, within AO356_06515at 1442.489 kb on + strand, within AO356_06515at 1442.489 kb on + strand, within AO356_06515at 1442.489 kb on + strand, within AO356_06515at 1442.490 kb on - strandat 1442.490 kb on - strandat 1442.510 kb on - strandat 1442.560 kb on + strandat 1442.560 kb on + strandat 1442.561 kb on - strandat 1442.561 kb on - strandat 1442.561 kb on - strandat 1442.621 kb on + strandat 1442.621 kb on + strandat 1442.621 kb on + strandat 1442.621 kb on + strandat 1442.622 kb on - strandat 1442.622 kb on - strandat 1442.622 kb on - strandat 1442.673 kb on + strandat 1442.673 kb on + strandat 1442.673 kb on + strandat 1442.674 kb on - strandat 1442.674 kb on - strandat 1442.674 kb on - strandat 1442.687 kb on + strandat 1442.742 kb on + strandat 1442.742 kb on + strandat 1442.742 kb on + strandat 1442.743 kb on - strandat 1442.801 kb on - strandat 1442.817 kb on + strandat 1442.817 kb on + strandat 1442.854 kb on - strandat 1442.870 kb on + strandat 1442.957 kb on + strandat 1442.983 kb on + strandat 1442.983 kb on + strandat 1442.983 kb on + strandat 1442.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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1,440,380 - -0.1
1,440,472 + AO356_06510 0.23 -0.4
1,440,489 + AO356_06510 0.25 -1.3
1,440,489 + AO356_06510 0.25 -0.2
1,440,489 + AO356_06510 0.25 +0.1
1,440,489 + AO356_06510 0.25 +0.1
1,440,490 - AO356_06510 0.25 -0.3
1,440,490 - AO356_06510 0.25 +1.2
1,440,490 - AO356_06510 0.25 -0.7
1,440,570 - AO356_06510 0.38 +0.9
1,440,570 - AO356_06510 0.38 -0.6
1,440,735 + AO356_06510 0.64 -0.1
1,440,735 + AO356_06510 0.64 -1.4
1,440,735 + AO356_06510 0.64 -0.4
1,440,736 - AO356_06510 0.64 -0.8
1,440,736 - AO356_06510 0.64 -0.1
1,440,736 - AO356_06510 0.64 -0.5
1,440,736 - AO356_06510 0.64 +0.2
1,440,859 + AO356_06510 0.84 -0.6
1,440,912 + +0.2
1,440,912 + -0.1
1,440,912 + -0.3
1,440,913 - +0.2
1,440,913 - -1.0
1,440,913 - +0.2
1,440,913 - -0.3
1,441,053 + +0.5
1,441,069 + -0.7
1,441,069 + +0.6
1,441,095 + +0.5
1,441,096 - +0.1
1,441,096 - +2.3
1,441,121 + +0.6
1,441,196 + +1.1
1,441,196 + +0.3
1,441,197 - +0.1
1,441,197 - +1.6
1,441,197 - +0.6
1,441,197 - -0.6
1,441,197 - -0.6
1,441,197 - +0.4
1,441,197 - +0.1
1,441,197 - -0.0
1,441,197 - -1.1
1,441,406 - +0.2
1,441,406 - +0.4
1,441,462 + +0.4
1,441,462 + +1.0
1,441,463 - -0.6
1,441,463 - +1.3
1,441,463 - -0.0
1,441,463 - +0.7
1,441,463 - -0.1
1,441,463 - +0.1
1,441,463 - +0.3
1,441,492 + AO356_06515 0.12 -0.1
1,441,523 + AO356_06515 0.15 -0.2
1,441,523 + AO356_06515 0.15 -0.5
1,441,524 - AO356_06515 0.15 -1.0
1,441,524 - AO356_06515 0.15 +0.6
1,441,529 + AO356_06515 0.15 +0.2
1,441,529 + AO356_06515 0.15 -0.3
1,441,529 + AO356_06515 0.15 +0.2
1,441,529 + AO356_06515 0.15 -0.2
1,441,529 + AO356_06515 0.15 +0.6
1,441,529 + AO356_06515 0.15 -0.1
1,441,529 + AO356_06515 0.15 +0.6
1,441,529 + AO356_06515 0.15 -0.7
1,441,529 + AO356_06515 0.15 +0.8
1,441,530 - AO356_06515 0.15 -0.2
1,441,530 - AO356_06515 0.15 +0.2
1,441,530 - AO356_06515 0.15 -0.9
1,441,530 - AO356_06515 0.15 +0.4
1,441,530 - AO356_06515 0.15 -1.8
1,441,530 - AO356_06515 0.15 +0.6
1,441,530 - AO356_06515 0.15 +0.7
1,441,535 + AO356_06515 0.15 +0.4
1,441,535 + AO356_06515 0.15 +0.0
1,441,536 - AO356_06515 0.16 +1.1
1,441,538 - AO356_06515 0.16 -0.1
1,441,545 + AO356_06515 0.16 +0.6
1,441,545 + AO356_06515 0.16 +0.4
1,441,545 + AO356_06515 0.16 -1.6
1,441,546 - AO356_06515 0.16 -0.2
1,441,905 + AO356_06515 0.44 +0.7
1,441,906 - AO356_06515 0.44 +1.4
1,441,917 + AO356_06515 0.45 +0.0
1,441,917 + AO356_06515 0.45 +0.5
1,441,917 + AO356_06515 0.45 +0.8
1,441,918 - AO356_06515 0.45 -0.4
1,441,918 - AO356_06515 0.45 +0.3
1,441,918 - AO356_06515 0.45 +1.2
1,441,960 + AO356_06515 0.49 +0.3
1,441,961 - AO356_06515 0.49 +1.1
1,441,976 - AO356_06515 0.50 -0.2
1,442,062 + AO356_06515 0.57 -0.3
1,442,062 + AO356_06515 0.57 +1.2
1,442,062 + AO356_06515 0.57 +0.8
1,442,063 - AO356_06515 0.57 +0.1
1,442,063 - AO356_06515 0.57 +0.3
1,442,063 - AO356_06515 0.57 -0.7
1,442,063 - AO356_06515 0.57 -0.7
1,442,066 + AO356_06515 0.57 +0.7
1,442,066 + AO356_06515 0.57 +0.5
1,442,066 + AO356_06515 0.57 +0.7
1,442,067 - AO356_06515 0.57 -0.2
1,442,067 - AO356_06515 0.57 -0.7
1,442,086 - AO356_06515 0.58 +0.4
1,442,086 - AO356_06515 0.58 +0.4
1,442,086 - AO356_06515 0.58 -0.0
1,442,086 - AO356_06515 0.58 +0.3
1,442,137 - AO356_06515 0.62 -0.3
1,442,190 + AO356_06515 0.67 +0.4
1,442,190 + AO356_06515 0.67 +0.8
1,442,190 + AO356_06515 0.67 +0.3
1,442,191 - AO356_06515 0.67 -0.3
1,442,191 - AO356_06515 0.67 -0.3
1,442,196 + AO356_06515 0.67 +0.6
1,442,197 - AO356_06515 0.67 +0.0
1,442,242 + AO356_06515 0.71 -0.1
1,442,242 + AO356_06515 0.71 +0.0
1,442,243 - AO356_06515 0.71 -0.9
1,442,293 + AO356_06515 0.75 +1.0
1,442,302 + AO356_06515 0.75 +1.2
1,442,303 - AO356_06515 0.75 -0.6
1,442,337 - AO356_06515 0.78 +0.9
1,442,337 - AO356_06515 0.78 +0.5
1,442,337 - AO356_06515 0.78 -0.1
1,442,341 + AO356_06515 0.78 +0.1
1,442,341 + AO356_06515 0.78 -0.9
1,442,362 - AO356_06515 0.80 +1.4
1,442,362 - AO356_06515 0.80 +0.1
1,442,374 + AO356_06515 0.81 -0.7
1,442,374 + AO356_06515 0.81 -1.5
1,442,374 + AO356_06515 0.81 +0.0
1,442,374 + AO356_06515 0.81 +0.0
1,442,374 + AO356_06515 0.81 -0.7
1,442,374 + AO356_06515 0.81 -1.9
1,442,374 + AO356_06515 0.81 -1.5
1,442,375 - AO356_06515 0.81 +0.2
1,442,375 - AO356_06515 0.81 +0.8
1,442,449 + AO356_06515 0.87 +0.7
1,442,449 + AO356_06515 0.87 -2.0
1,442,450 - AO356_06515 0.87 -0.1
1,442,450 - AO356_06515 0.87 +0.4
1,442,450 - AO356_06515 0.87 +0.0
1,442,450 - AO356_06515 0.87 +0.7
1,442,450 - AO356_06515 0.87 +0.1
1,442,451 + AO356_06515 0.87 -1.1
1,442,451 + AO356_06515 0.87 +0.6
1,442,451 + AO356_06515 0.87 -0.1
1,442,451 + AO356_06515 0.87 -0.8
1,442,451 + AO356_06515 0.87 +0.6
1,442,451 + AO356_06515 0.87 +0.4
1,442,452 - AO356_06515 0.87 -0.1
1,442,452 - AO356_06515 0.87 -0.8
1,442,452 - AO356_06515 0.87 +1.1
1,442,452 - AO356_06515 0.87 -0.3
1,442,483 + AO356_06515 0.89 +0.7
1,442,483 + AO356_06515 0.89 +0.7
1,442,483 + AO356_06515 0.89 -0.6
1,442,483 + AO356_06515 0.89 +0.8
1,442,483 + AO356_06515 0.89 -0.2
1,442,483 + AO356_06515 0.89 -0.0
1,442,484 - AO356_06515 0.90 -0.4
1,442,484 - AO356_06515 0.90 -0.6
1,442,484 - AO356_06515 0.90 -1.1
1,442,484 - AO356_06515 0.90 -0.5
1,442,484 - AO356_06515 0.90 -0.5
1,442,487 + AO356_06515 0.90 +0.4
1,442,487 + AO356_06515 0.90 +0.4
1,442,487 + AO356_06515 0.90 -0.0
1,442,487 + AO356_06515 0.90 +0.4
1,442,487 + AO356_06515 0.90 -1.3
1,442,487 + AO356_06515 0.90 +0.4
1,442,487 + AO356_06515 0.90 -0.5
1,442,487 + AO356_06515 0.90 +0.3
1,442,487 + AO356_06515 0.90 +1.3
1,442,487 + AO356_06515 0.90 +0.5
1,442,487 + AO356_06515 0.90 -0.0
1,442,487 + AO356_06515 0.90 +0.4
1,442,487 + AO356_06515 0.90 +0.3
1,442,487 + AO356_06515 0.90 +0.9
1,442,488 - AO356_06515 0.90 +0.7
1,442,488 - AO356_06515 0.90 +0.0
1,442,488 - AO356_06515 0.90 +0.2
1,442,488 - AO356_06515 0.90 -0.8
1,442,488 - AO356_06515 0.90 -0.5
1,442,488 - AO356_06515 0.90 +0.3
1,442,488 - AO356_06515 0.90 +0.0
1,442,488 - AO356_06515 0.90 +0.6
1,442,488 - AO356_06515 0.90 -0.3
1,442,488 - AO356_06515 0.90 -0.5
1,442,489 + AO356_06515 0.90 +0.6
1,442,489 + AO356_06515 0.90 +0.3
1,442,489 + AO356_06515 0.90 -0.0
1,442,489 + AO356_06515 0.90 +0.2
1,442,490 - -1.0
1,442,490 - +0.2
1,442,510 - +0.1
1,442,560 + +1.1
1,442,560 + -0.8
1,442,561 - -0.8
1,442,561 - +0.3
1,442,561 - +0.6
1,442,621 + +0.6
1,442,621 + +0.1
1,442,621 + +0.8
1,442,621 + -1.6
1,442,622 - +0.7
1,442,622 - +0.4
1,442,622 - +1.4
1,442,673 + +0.8
1,442,673 + -0.1
1,442,673 + -0.0
1,442,674 - +0.2
1,442,674 - +0.8
1,442,674 - +0.0
1,442,687 + +1.2
1,442,742 + +0.1
1,442,742 + -0.6
1,442,742 + -1.8
1,442,743 - +0.0
1,442,801 - -0.7
1,442,817 + -0.5
1,442,817 + +0.5
1,442,854 - -0.7
1,442,870 + +0.3
1,442,957 + +0.2
1,442,983 + +0.2
1,442,983 + +2.0
1,442,983 + -0.3
1,442,984 - +1.1

Or see this region's nucleotide sequence