Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04650

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04645 and AO356_04650 are separated by 15 nucleotidesAO356_04650 and AO356_04655 overlap by 4 nucleotidesAO356_04655 and AO356_04660 are separated by 13 nucleotides AO356_04645: AO356_04645 - lipid kinase, at 1,046,266 to 1,047,333 _04645 AO356_04650: AO356_04650 - lipid kinase, at 1,047,349 to 1,048,164 _04650 AO356_04655: AO356_04655 - lauroyl acyltransferase, at 1,048,161 to 1,048,949 _04655 AO356_04660: AO356_04660 - urea carboxylase, at 1,048,963 to 1,049,688 _04660 Position (kb) 1047 1048 1049Strain fitness (log2 ratio) -1 0 1 2at 1046.374 kb on + strand, within AO356_04645at 1046.374 kb on + strand, within AO356_04645at 1046.374 kb on + strand, within AO356_04645at 1046.374 kb on + strand, within AO356_04645at 1046.375 kb on - strand, within AO356_04645at 1046.476 kb on + strand, within AO356_04645at 1046.476 kb on + strand, within AO356_04645at 1046.477 kb on - strand, within AO356_04645at 1046.497 kb on + strand, within AO356_04645at 1046.497 kb on + strand, within AO356_04645at 1046.498 kb on - strand, within AO356_04645at 1046.702 kb on - strand, within AO356_04645at 1047.301 kb on + strandat 1047.301 kb on + strandat 1047.301 kb on + strandat 1047.301 kb on + strandat 1047.302 kb on - strandat 1047.302 kb on - strandat 1047.302 kb on - strandat 1047.302 kb on - strandat 1047.302 kb on - strandat 1047.302 kb on - strandat 1047.305 kb on + strandat 1047.305 kb on + strandat 1047.305 kb on + strandat 1047.305 kb on + strandat 1047.305 kb on + strandat 1047.306 kb on - strandat 1047.306 kb on - strandat 1047.306 kb on - strandat 1047.306 kb on - strandat 1047.495 kb on - strand, within AO356_04650at 1047.495 kb on - strand, within AO356_04650at 1047.553 kb on + strand, within AO356_04650at 1047.554 kb on - strand, within AO356_04650at 1047.554 kb on - strand, within AO356_04650at 1047.918 kb on - strand, within AO356_04650at 1047.918 kb on - strand, within AO356_04650at 1048.066 kb on + strand, within AO356_04650at 1048.067 kb on - strand, within AO356_04650at 1048.067 kb on - strand, within AO356_04650at 1048.144 kb on + strandat 1048.145 kb on - strandat 1048.145 kb on - strandat 1048.307 kb on - strand, within AO356_04655at 1048.404 kb on + strand, within AO356_04655at 1048.565 kb on + strand, within AO356_04655at 1048.566 kb on - strand, within AO356_04655at 1048.566 kb on - strand, within AO356_04655at 1048.566 kb on - strand, within AO356_04655at 1048.566 kb on - strand, within AO356_04655at 1048.569 kb on + strand, within AO356_04655at 1048.840 kb on - strand, within AO356_04655at 1048.857 kb on + strand, within AO356_04655at 1048.857 kb on + strand, within AO356_04655at 1048.857 kb on + strand, within AO356_04655at 1048.857 kb on + strand, within AO356_04655at 1048.858 kb on - strand, within AO356_04655at 1048.986 kb on + strandat 1049.103 kb on - strand, within AO356_04660

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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1,046,374 + AO356_04645 0.10 -1.0
1,046,374 + AO356_04645 0.10 -0.8
1,046,374 + AO356_04645 0.10 +0.7
1,046,374 + AO356_04645 0.10 +0.4
1,046,375 - AO356_04645 0.10 +0.8
1,046,476 + AO356_04645 0.20 +0.9
1,046,476 + AO356_04645 0.20 -0.0
1,046,477 - AO356_04645 0.20 -0.2
1,046,497 + AO356_04645 0.22 -0.8
1,046,497 + AO356_04645 0.22 +1.5
1,046,498 - AO356_04645 0.22 +0.3
1,046,702 - AO356_04645 0.41 -0.1
1,047,301 + -0.0
1,047,301 + +0.4
1,047,301 + -0.2
1,047,301 + -0.6
1,047,302 - +0.7
1,047,302 - -0.2
1,047,302 - -0.5
1,047,302 - -0.2
1,047,302 - +1.2
1,047,302 - +0.2
1,047,305 + +0.2
1,047,305 + +0.9
1,047,305 + +0.3
1,047,305 + +0.2
1,047,305 + +0.3
1,047,306 - +0.1
1,047,306 - +0.5
1,047,306 - +0.3
1,047,306 - -0.0
1,047,495 - AO356_04650 0.18 -0.7
1,047,495 - AO356_04650 0.18 -0.3
1,047,553 + AO356_04650 0.25 -0.4
1,047,554 - AO356_04650 0.25 +0.1
1,047,554 - AO356_04650 0.25 +0.5
1,047,918 - AO356_04650 0.70 +0.8
1,047,918 - AO356_04650 0.70 +0.3
1,048,066 + AO356_04650 0.88 -0.2
1,048,067 - AO356_04650 0.88 +1.8
1,048,067 - AO356_04650 0.88 -0.8
1,048,144 + -0.6
1,048,145 - +0.9
1,048,145 - -0.4
1,048,307 - AO356_04655 0.19 -0.1
1,048,404 + AO356_04655 0.31 -0.4
1,048,565 + AO356_04655 0.51 -0.3
1,048,566 - AO356_04655 0.51 +0.0
1,048,566 - AO356_04655 0.51 +0.4
1,048,566 - AO356_04655 0.51 +0.4
1,048,566 - AO356_04655 0.51 +0.3
1,048,569 + AO356_04655 0.52 -0.6
1,048,840 - AO356_04655 0.86 +0.8
1,048,857 + AO356_04655 0.88 -0.9
1,048,857 + AO356_04655 0.88 +0.1
1,048,857 + AO356_04655 0.88 -0.5
1,048,857 + AO356_04655 0.88 -0.7
1,048,858 - AO356_04655 0.88 -1.0
1,048,986 + +1.0
1,049,103 - AO356_04660 0.19 -0.2

Or see this region's nucleotide sequence