Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4187 and Dshi_4188 are separated by 13 nucleotides Dshi_4188 and Dshi_4189 are separated by 95 nucleotides Dshi_4189 and Dshi_4190 are separated by 163 nucleotides
Dshi_4187: Dshi_4187 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 33,135 to 33,890
_4187
Dshi_4188: Dshi_4188 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 33,904 to 34,665
_4188
Dshi_4189: Dshi_4189 - ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein (RefSeq), at 34,761 to 35,777
_4189
Dshi_4190: Dshi_4190 - hypothetical protein (RefSeq), at 35,941 to 37,218
_4190
Position (kb) 34
35
36 Strain fitness (log2 ratio) -1
0
1 at 33.852 kb on + strand at 34.437 kb on + strand, within Dshi_4188 at 34.607 kb on + strand at 34.752 kb on - strand at 34.836 kb on + strand at 34.894 kb on + strand, within Dshi_4189 at 34.975 kb on - strand, within Dshi_4189 at 35.378 kb on - strand, within Dshi_4189 at 35.397 kb on - strand, within Dshi_4189 at 35.631 kb on + strand, within Dshi_4189 at 35.743 kb on - strand at 35.845 kb on + strand at 35.893 kb on + strand at 36.013 kb on - strand at 36.378 kb on - strand, within Dshi_4190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 33,852 + +0.6 34,437 + Dshi_4188 0.70 -1.0 34,607 + +1.2 34,752 - -1.3 34,836 + +0.0 34,894 + Dshi_4189 0.13 -0.3 34,975 - Dshi_4189 0.21 +0.6 35,378 - Dshi_4189 0.61 -0.3 35,397 - Dshi_4189 0.63 -1.0 35,631 + Dshi_4189 0.86 +1.0 35,743 - +0.0 35,845 + +0.0 35,893 + -0.1 36,013 - -0.7 36,378 - Dshi_4190 0.34 +0.2
Or see this region's nucleotide sequence