Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4015 and Dshi_4016 are separated by 156 nucleotides Dshi_4016 and Dshi_4017 are separated by 87 nucleotides Dshi_4017 and Dshi_4018 are separated by 23 nucleotides Dshi_4018 and Dshi_4019 are separated by 40 nucleotides Dshi_4019 and Dshi_4020 are separated by 278 nucleotides
Dshi_4015: Dshi_4015 - parB-like partition protein (RefSeq), at 81,749 to 83,731
_4015
Dshi_4016: Dshi_4016 - hypothetical protein (RefSeq), at 83,888 to 84,277
_4016
Dshi_4017: Dshi_4017 - hypothetical protein (RefSeq), at 84,365 to 84,574
_4017
Dshi_4018: Dshi_4018 - domain of unknown function DUF1738 (RefSeq), at 84,598 to 85,536
_4018
Dshi_4019: Dshi_4019 - hypothetical protein (RefSeq), at 85,577 to 86,062
_4019
Dshi_4020: Dshi_4020 - filamentation induced by cAMP protein Fic (RefSeq), at 86,341 to 87,543
_4020
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1
2 at 83.607 kb on - strand at 83.668 kb on + strand at 83.668 kb on + strand at 83.671 kb on - strand at 83.706 kb on + strand at 83.739 kb on + strand at 83.810 kb on + strand at 83.880 kb on + strand at 83.884 kb on + strand at 83.888 kb on - strand at 84.020 kb on + strand, within Dshi_4016 at 84.028 kb on - strand, within Dshi_4016 at 84.158 kb on + strand, within Dshi_4016 at 84.210 kb on - strand, within Dshi_4016 at 84.238 kb on + strand, within Dshi_4016 at 84.246 kb on - strand at 84.246 kb on - strand at 84.246 kb on - strand at 84.260 kb on - strand at 84.265 kb on - strand at 84.294 kb on - strand at 84.376 kb on + strand at 84.377 kb on + strand at 84.422 kb on + strand, within Dshi_4017 at 84.425 kb on - strand, within Dshi_4017 at 84.427 kb on + strand, within Dshi_4017 at 84.430 kb on - strand, within Dshi_4017 at 84.911 kb on + strand, within Dshi_4018 at 84.918 kb on + strand, within Dshi_4018 at 84.946 kb on - strand, within Dshi_4018 at 84.948 kb on + strand, within Dshi_4018 at 84.968 kb on + strand, within Dshi_4018 at 84.988 kb on + strand, within Dshi_4018 at 85.062 kb on + strand, within Dshi_4018 at 85.088 kb on + strand, within Dshi_4018 at 85.136 kb on + strand, within Dshi_4018 at 85.146 kb on + strand, within Dshi_4018 at 85.260 kb on - strand, within Dshi_4018 at 85.312 kb on - strand, within Dshi_4018 at 85.352 kb on - strand, within Dshi_4018 at 85.392 kb on - strand, within Dshi_4018 at 85.531 kb on + strand at 85.568 kb on + strand at 85.686 kb on + strand, within Dshi_4019 at 85.713 kb on - strand, within Dshi_4019 at 85.742 kb on + strand, within Dshi_4019 at 85.792 kb on - strand, within Dshi_4019 at 85.816 kb on + strand, within Dshi_4019 at 85.916 kb on + strand, within Dshi_4019 at 85.959 kb on + strand, within Dshi_4019 at 85.982 kb on - strand, within Dshi_4019 at 85.985 kb on + strand, within Dshi_4019 at 85.996 kb on + strand, within Dshi_4019 at 86.021 kb on + strand at 86.049 kb on + strand at 86.071 kb on + strand at 86.094 kb on - strand at 86.103 kb on - strand at 86.122 kb on - strand at 86.166 kb on + strand at 86.166 kb on + strand at 86.166 kb on + strand at 86.370 kb on + strand at 86.453 kb on + strand at 86.485 kb on + strand, within Dshi_4020 at 86.521 kb on - strand, within Dshi_4020 at 86.521 kb on - strand, within Dshi_4020
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 83,607 - +1.3 83,668 + +0.1 83,668 + +0.3 83,671 - +0.3 83,706 + -1.0 83,739 + +0.7 83,810 + +0.2 83,880 + +0.6 83,884 + +0.9 83,888 - -0.2 84,020 + Dshi_4016 0.34 -0.4 84,028 - Dshi_4016 0.36 -0.8 84,158 + Dshi_4016 0.69 -0.6 84,210 - Dshi_4016 0.83 +0.3 84,238 + Dshi_4016 0.90 +0.6 84,246 - -0.3 84,246 - +0.4 84,246 - -0.2 84,260 - +0.3 84,265 - +0.1 84,294 - -0.6 84,376 + -0.3 84,377 + -0.0 84,422 + Dshi_4017 0.27 +0.8 84,425 - Dshi_4017 0.29 +1.3 84,427 + Dshi_4017 0.30 +0.5 84,430 - Dshi_4017 0.31 +0.2 84,911 + Dshi_4018 0.33 -0.8 84,918 + Dshi_4018 0.34 -1.5 84,946 - Dshi_4018 0.37 +0.0 84,948 + Dshi_4018 0.37 +0.2 84,968 + Dshi_4018 0.39 -0.3 84,988 + Dshi_4018 0.42 +0.8 85,062 + Dshi_4018 0.49 -0.3 85,088 + Dshi_4018 0.52 -1.0 85,136 + Dshi_4018 0.57 -1.4 85,146 + Dshi_4018 0.58 -0.1 85,260 - Dshi_4018 0.71 -0.4 85,312 - Dshi_4018 0.76 -1.3 85,352 - Dshi_4018 0.80 +0.5 85,392 - Dshi_4018 0.85 -0.8 85,531 + -0.2 85,568 + +1.4 85,686 + Dshi_4019 0.22 -0.4 85,713 - Dshi_4019 0.28 -0.1 85,742 + Dshi_4019 0.34 +0.6 85,792 - Dshi_4019 0.44 +0.2 85,816 + Dshi_4019 0.49 -0.7 85,916 + Dshi_4019 0.70 -1.1 85,959 + Dshi_4019 0.79 -0.6 85,982 - Dshi_4019 0.83 +1.2 85,985 + Dshi_4019 0.84 +1.0 85,996 + Dshi_4019 0.86 +1.0 86,021 + +0.8 86,049 + +0.6 86,071 + +0.4 86,094 - +0.1 86,103 - -0.2 86,122 - +1.0 86,166 + +2.0 86,166 + -0.4 86,166 + -0.2 86,370 + -1.0 86,453 + +0.3 86,485 + Dshi_4020 0.12 -0.6 86,521 - Dshi_4020 0.15 -1.0 86,521 - Dshi_4020 0.15 +0.3
Or see this region's nucleotide sequence