Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3294 and Dshi_3295 are separated by 20 nucleotides Dshi_3295 and Dshi_3296 are separated by 3 nucleotides Dshi_3296 and Dshi_3297 overlap by 4 nucleotides
Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903
_3294
Dshi_3295: Dshi_3295 - Polyprenyl synthetase (RefSeq), at 3,461,924 to 3,462,799
_3295
Dshi_3296: Dshi_3296 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,462,803 to 3,463,045
_3296
Dshi_3297: Dshi_3297 - histone deacetylase superfamily (RefSeq), at 3,463,042 to 3,463,983
_3297
Position (kb)
3461
3462
3463 Strain fitness (log2 ratio)
-2
-1
0
1 at 3460.927 kb on - strand, within Dshi_3294 at 3460.971 kb on - strand, within Dshi_3294 at 3460.998 kb on - strand, within Dshi_3294 at 3461.087 kb on - strand, within Dshi_3294 at 3461.143 kb on - strand, within Dshi_3294 at 3461.190 kb on - strand, within Dshi_3294 at 3461.266 kb on + strand, within Dshi_3294 at 3461.400 kb on + strand, within Dshi_3294 at 3461.400 kb on + strand, within Dshi_3294 at 3461.514 kb on - strand, within Dshi_3294 at 3461.531 kb on + strand, within Dshi_3294 at 3461.661 kb on + strand, within Dshi_3294 at 3461.701 kb on + strand, within Dshi_3294 at 3461.825 kb on + strand at 3461.833 kb on - strand at 3462.436 kb on + strand, within Dshi_3295 at 3462.836 kb on - strand, within Dshi_3296 at 3463.089 kb on + strand at 3463.097 kb on - strand at 3463.107 kb on - strand at 3463.112 kb on - strand at 3463.239 kb on + strand, within Dshi_3297 at 3463.357 kb on + strand, within Dshi_3297 at 3463.449 kb on + strand, within Dshi_3297 at 3463.655 kb on - strand, within Dshi_3297 at 3463.747 kb on + strand, within Dshi_3297 at 3463.762 kb on + strand, within Dshi_3297 at 3463.793 kb on - strand, within Dshi_3297
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 3,460,927 - Dshi_3294 0.49 -1.4 3,460,971 - Dshi_3294 0.52 +0.6 3,460,998 - Dshi_3294 0.53 +0.5 3,461,087 - Dshi_3294 0.58 -0.6 3,461,143 - Dshi_3294 0.61 +0.1 3,461,190 - Dshi_3294 0.63 -1.9 3,461,266 + Dshi_3294 0.67 -0.6 3,461,400 + Dshi_3294 0.74 -0.3 3,461,400 + Dshi_3294 0.74 +0.2 3,461,514 - Dshi_3294 0.80 +0.1 3,461,531 + Dshi_3294 0.81 -0.8 3,461,661 + Dshi_3294 0.87 -0.3 3,461,701 + Dshi_3294 0.89 -0.4 3,461,825 + -0.7 3,461,833 - -0.7 3,462,436 + Dshi_3295 0.58 -1.3 3,462,836 - Dshi_3296 0.14 -0.4 3,463,089 + -0.2 3,463,097 - +0.1 3,463,107 - +0.8 3,463,112 - -0.2 3,463,239 + Dshi_3297 0.21 +0.6 3,463,357 + Dshi_3297 0.33 +1.4 3,463,449 + Dshi_3297 0.43 +0.7 3,463,655 - Dshi_3297 0.65 +0.9 3,463,747 + Dshi_3297 0.75 +1.2 3,463,762 + Dshi_3297 0.76 +0.7 3,463,793 - Dshi_3297 0.80 -0.4
Or see this region's nucleotide sequence