Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2856
Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Sisomicin 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,014,790 | + | Dshi_2855 | 0.61 | -0.0 | |
3,014,877 | + | Dshi_2855 | 0.65 | +0.5 | |
3,014,881 | + | Dshi_2855 | 0.65 | +1.2 | |
3,014,889 | - | Dshi_2855 | 0.66 | -0.5 | |
3,015,006 | - | Dshi_2855 | 0.72 | +0.5 | |
3,015,014 | + | Dshi_2855 | 0.72 | +0.8 | |
3,015,110 | - | Dshi_2855 | 0.77 | -0.8 | |
3,015,193 | - | Dshi_2855 | 0.81 | -0.2 | |
3,015,395 | - | +1.1 | |||
3,015,680 | + | +0.2 | |||
3,015,805 | - | Dshi_2856 | 0.25 | -0.2 | |
3,016,023 | + | Dshi_2856 | 0.67 | -0.4 | |
3,016,219 | + | -0.7 | |||
3,016,231 | + | +0.7 | |||
3,016,236 | + | +0.4 | |||
3,016,237 | + | +0.0 | |||
3,016,237 | + | +0.6 | |||
3,016,419 | - | Dshi_2857 | 0.30 | -0.3 | |
3,016,465 | + | Dshi_2857 | 0.40 | -0.3 | |
3,016,511 | + | Dshi_2857 | 0.49 | -0.0 | |
3,016,583 | + | Dshi_2857 | 0.65 | +0.2 | |
3,016,622 | - | Dshi_2857 | 0.73 | -0.6 | |
3,016,863 | + | +0.8 | |||
3,016,871 | - | -0.1 | |||
3,017,113 | - | Dshi_2858 | 0.31 | +1.2 | |
3,017,144 | + | Dshi_2858 | 0.35 | +0.3 |
Or see this region's nucleotide sequence