Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2824 and Dshi_2825 are separated by 51 nucleotides Dshi_2825 and Dshi_2826 are separated by 46 nucleotides Dshi_2826 and Dshi_2827 are separated by 37 nucleotides
Dshi_2824: Dshi_2824 - hypothetical protein (RefSeq), at 2,980,248 to 2,981,147
_2824
Dshi_2825: Dshi_2825 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 2,981,199 to 2,982,374
_2825
Dshi_2826: Dshi_2826 - hypothetical protein (RefSeq), at 2,982,421 to 2,983,074
_2826
Dshi_2827: Dshi_2827 - YceI family protein (RefSeq), at 2,983,112 to 2,983,675
_2827
Position (kb)
2981
2982
2983 Strain fitness (log2 ratio)
-1
0
1 at 2980.282 kb on + strand at 2980.342 kb on + strand, within Dshi_2824 at 2980.404 kb on + strand, within Dshi_2824 at 2980.568 kb on - strand, within Dshi_2824 at 2980.604 kb on - strand, within Dshi_2824 at 2980.626 kb on + strand, within Dshi_2824 at 2980.693 kb on - strand, within Dshi_2824 at 2980.714 kb on - strand, within Dshi_2824 at 2980.814 kb on - strand, within Dshi_2824 at 2980.847 kb on + strand, within Dshi_2824 at 2980.855 kb on - strand, within Dshi_2824 at 2980.922 kb on - strand, within Dshi_2824 at 2980.980 kb on + strand, within Dshi_2824 at 2981.099 kb on - strand at 2981.190 kb on + strand at 2981.196 kb on + strand at 2981.251 kb on - strand at 2981.378 kb on + strand, within Dshi_2825 at 2981.766 kb on - strand, within Dshi_2825 at 2981.770 kb on - strand, within Dshi_2825 at 2981.952 kb on + strand, within Dshi_2825 at 2982.040 kb on + strand, within Dshi_2825 at 2982.040 kb on + strand, within Dshi_2825 at 2982.043 kb on - strand, within Dshi_2825 at 2982.683 kb on + strand, within Dshi_2826 at 2982.737 kb on - strand, within Dshi_2826 at 2983.100 kb on - strand at 2983.102 kb on + strand at 2983.110 kb on - strand at 2983.317 kb on + strand at 2983.325 kb on - strand, within Dshi_2827
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 2,980,282 + +0.4 2,980,342 + Dshi_2824 0.10 -1.2 2,980,404 + Dshi_2824 0.17 +0.5 2,980,568 - Dshi_2824 0.36 +1.1 2,980,604 - Dshi_2824 0.40 +0.0 2,980,626 + Dshi_2824 0.42 +0.4 2,980,693 - Dshi_2824 0.49 -1.7 2,980,714 - Dshi_2824 0.52 +0.7 2,980,814 - Dshi_2824 0.63 +0.2 2,980,847 + Dshi_2824 0.67 +0.4 2,980,855 - Dshi_2824 0.67 +0.5 2,980,922 - Dshi_2824 0.75 +0.1 2,980,980 + Dshi_2824 0.81 +0.3 2,981,099 - -0.4 2,981,190 + +0.8 2,981,196 + -0.3 2,981,251 - +0.0 2,981,378 + Dshi_2825 0.15 +0.2 2,981,766 - Dshi_2825 0.48 +0.1 2,981,770 - Dshi_2825 0.49 +0.1 2,981,952 + Dshi_2825 0.64 -0.1 2,982,040 + Dshi_2825 0.72 +1.0 2,982,040 + Dshi_2825 0.72 -0.4 2,982,043 - Dshi_2825 0.72 +1.0 2,982,683 + Dshi_2826 0.40 +0.3 2,982,737 - Dshi_2826 0.48 -0.3 2,983,100 - +0.0 2,983,102 + -0.1 2,983,110 - +0.2 2,983,317 + +0.8 2,983,325 - Dshi_2827 0.38 +1.7
Or see this region's nucleotide sequence