Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1183

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1182 and Dshi_1183 are separated by 203 nucleotidesDshi_1183 and Dshi_1184 are separated by 72 nucleotides Dshi_1182: Dshi_1182 - 5-aminolevulinic acid synthase (RefSeq), at 1,216,936 to 1,218,159 _1182 Dshi_1183: Dshi_1183 - hypothetical protein (RefSeq), at 1,218,363 to 1,219,592 _1183 Dshi_1184: Dshi_1184 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq), at 1,219,665 to 1,220,816 _1184 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -2 -1 0 1at 1217.422 kb on + strand, within Dshi_1182at 1217.573 kb on - strand, within Dshi_1182at 1217.732 kb on - strand, within Dshi_1182at 1217.846 kb on - strand, within Dshi_1182at 1217.974 kb on - strand, within Dshi_1182at 1218.038 kb on - strandat 1218.084 kb on - strandat 1219.275 kb on - strand, within Dshi_1183at 1219.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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1,217,422 + Dshi_1182 0.40 -0.3
1,217,573 - Dshi_1182 0.52 -0.9
1,217,732 - Dshi_1182 0.65 -0.1
1,217,846 - Dshi_1182 0.74 -0.1
1,217,974 - Dshi_1182 0.85 +0.0
1,218,038 - -0.3
1,218,084 - -0.0
1,219,275 - Dshi_1183 0.74 -2.4
1,219,558 + -0.2

Or see this region's nucleotide sequence