Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0948 and Dshi_0949 are separated by 51 nucleotides Dshi_0949 and Dshi_0950 are separated by 109 nucleotides Dshi_0950 and Dshi_0951 are separated by 209 nucleotides
Dshi_0948: Dshi_0948 - L-lactate dehydrogenase (cytochrome) (RefSeq), at 972,616 to 973,788
_0948
Dshi_0949: Dshi_0949 - hypothetical protein (RefSeq), at 973,840 to 974,457
_0949
Dshi_0950: Dshi_0950 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 (RefSeq), at 974,567 to 975,202
_0950
Dshi_0951: Dshi_0951 - hypothetical protein (RefSeq), at 975,412 to 975,882
_0951
Position (kb)
973
974
975 Strain fitness (log2 ratio)
-1
0
1 at 972.846 kb on - strand, within Dshi_0948 at 972.885 kb on + strand, within Dshi_0948 at 972.893 kb on - strand, within Dshi_0948 at 972.922 kb on + strand, within Dshi_0948 at 972.930 kb on - strand, within Dshi_0948 at 972.930 kb on - strand, within Dshi_0948 at 972.975 kb on + strand, within Dshi_0948 at 972.975 kb on + strand, within Dshi_0948 at 972.977 kb on + strand, within Dshi_0948 at 972.983 kb on - strand, within Dshi_0948 at 972.985 kb on - strand, within Dshi_0948 at 973.064 kb on + strand, within Dshi_0948 at 973.064 kb on - strand, within Dshi_0948 at 973.090 kb on - strand, within Dshi_0948 at 973.090 kb on - strand, within Dshi_0948 at 973.090 kb on - strand, within Dshi_0948 at 973.097 kb on + strand, within Dshi_0948 at 973.203 kb on - strand at 973.248 kb on + strand, within Dshi_0948 at 973.256 kb on - strand, within Dshi_0948 at 973.256 kb on - strand, within Dshi_0948 at 973.265 kb on + strand, within Dshi_0948 at 973.273 kb on - strand, within Dshi_0948 at 973.288 kb on - strand, within Dshi_0948 at 973.373 kb on - strand, within Dshi_0948 at 973.385 kb on - strand, within Dshi_0948 at 973.494 kb on + strand, within Dshi_0948 at 973.608 kb on + strand, within Dshi_0948 at 973.616 kb on - strand, within Dshi_0948 at 973.616 kb on - strand, within Dshi_0948 at 973.741 kb on - strand at 973.889 kb on - strand at 973.889 kb on - strand at 973.903 kb on - strand, within Dshi_0949 at 974.001 kb on - strand, within Dshi_0949 at 974.013 kb on + strand, within Dshi_0949 at 974.070 kb on + strand, within Dshi_0949 at 974.168 kb on + strand, within Dshi_0949 at 974.235 kb on + strand, within Dshi_0949 at 974.243 kb on - strand, within Dshi_0949 at 974.413 kb on + strand at 974.439 kb on - strand at 975.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 972,846 - Dshi_0948 0.20 +0.7 972,885 + Dshi_0948 0.23 -0.2 972,893 - Dshi_0948 0.24 +0.4 972,922 + Dshi_0948 0.26 -0.3 972,930 - Dshi_0948 0.27 -0.2 972,930 - Dshi_0948 0.27 +0.1 972,975 + Dshi_0948 0.31 +0.5 972,975 + Dshi_0948 0.31 -0.0 972,977 + Dshi_0948 0.31 +0.5 972,983 - Dshi_0948 0.31 +1.4 972,985 - Dshi_0948 0.31 -0.5 973,064 + Dshi_0948 0.38 -1.1 973,064 - Dshi_0948 0.38 -0.4 973,090 - Dshi_0948 0.40 +0.5 973,090 - Dshi_0948 0.40 -0.3 973,090 - Dshi_0948 0.40 +0.4 973,097 + Dshi_0948 0.41 +0.3 973,203 - -0.6 973,248 + Dshi_0948 0.54 -0.8 973,256 - Dshi_0948 0.55 +0.6 973,256 - Dshi_0948 0.55 -0.0 973,265 + Dshi_0948 0.55 +0.6 973,273 - Dshi_0948 0.56 -0.3 973,288 - Dshi_0948 0.57 +1.2 973,373 - Dshi_0948 0.65 -1.0 973,385 - Dshi_0948 0.66 -0.1 973,494 + Dshi_0948 0.75 +1.2 973,608 + Dshi_0948 0.85 -0.4 973,616 - Dshi_0948 0.85 -0.6 973,616 - Dshi_0948 0.85 -0.5 973,741 - -0.4 973,889 - +1.0 973,889 - +0.4 973,903 - Dshi_0949 0.10 +1.5 974,001 - Dshi_0949 0.26 -0.0 974,013 + Dshi_0949 0.28 +1.5 974,070 + Dshi_0949 0.37 +1.6 974,168 + Dshi_0949 0.53 -0.2 974,235 + Dshi_0949 0.64 +0.2 974,243 - Dshi_0949 0.65 +0.0 974,413 + +1.0 974,439 - -0.0 975,219 - -0.2
Or see this region's nucleotide sequence