Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3146

Experiment: LB, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3145 and Ga0059261_3146 are separated by 104 nucleotidesGa0059261_3146 and Ga0059261_3147 overlap by 54 nucleotidesGa0059261_3147 and Ga0059261_3148 are separated by 92 nucleotides Ga0059261_3145: Ga0059261_3145 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3), at 3,286,674 to 3,287,798 _3145 Ga0059261_3146: Ga0059261_3146 - Acyltransferase family, at 3,287,903 to 3,289,111 _3146 Ga0059261_3147: Ga0059261_3147 - transcriptional regulator, LytTR family, at 3,289,058 to 3,289,903 _3147 Ga0059261_3148: Ga0059261_3148 - Acyltransferase family, at 3,289,996 to 3,291,153 _3148 Position (kb) 3287 3288 3289 3290Strain fitness (log2 ratio) -2 -1 0 1 2at 3287.827 kb on - strandat 3287.891 kb on + strandat 3287.891 kb on + strandat 3287.891 kb on + strandat 3287.891 kb on + strandat 3287.891 kb on + strandat 3287.891 kb on + strandat 3287.891 kb on + strandat 3287.892 kb on - strandat 3287.892 kb on - strandat 3287.893 kb on + strandat 3287.893 kb on + strandat 3287.893 kb on + strandat 3287.946 kb on - strandat 3287.946 kb on - strandat 3287.993 kb on + strandat 3287.993 kb on + strandat 3287.993 kb on + strandat 3287.993 kb on + strandat 3287.993 kb on + strandat 3287.993 kb on + strandat 3287.993 kb on + strandat 3287.994 kb on - strandat 3287.994 kb on - strandat 3287.994 kb on - strandat 3287.994 kb on - strandat 3288.044 kb on + strand, within Ga0059261_3146at 3288.044 kb on + strand, within Ga0059261_3146at 3288.044 kb on + strand, within Ga0059261_3146at 3288.044 kb on + strand, within Ga0059261_3146at 3288.045 kb on - strand, within Ga0059261_3146at 3288.045 kb on - strand, within Ga0059261_3146at 3288.045 kb on - strand, within Ga0059261_3146at 3288.045 kb on - strand, within Ga0059261_3146at 3288.045 kb on - strand, within Ga0059261_3146at 3288.045 kb on - strand, within Ga0059261_3146at 3288.122 kb on + strand, within Ga0059261_3146at 3288.122 kb on + strand, within Ga0059261_3146at 3288.123 kb on - strand, within Ga0059261_3146at 3288.302 kb on + strand, within Ga0059261_3146at 3288.302 kb on + strand, within Ga0059261_3146at 3288.302 kb on + strand, within Ga0059261_3146at 3288.302 kb on + strand, within Ga0059261_3146at 3288.302 kb on + strand, within Ga0059261_3146at 3288.303 kb on - strand, within Ga0059261_3146at 3288.303 kb on - strand, within Ga0059261_3146at 3288.303 kb on - strand, within Ga0059261_3146at 3288.303 kb on - strand, within Ga0059261_3146at 3288.303 kb on - strand, within Ga0059261_3146at 3288.303 kb on - strand, within Ga0059261_3146at 3288.303 kb on - strand, within Ga0059261_3146at 3288.368 kb on + strand, within Ga0059261_3146at 3288.369 kb on - strand, within Ga0059261_3146at 3288.369 kb on - strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.380 kb on + strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.381 kb on - strand, within Ga0059261_3146at 3288.498 kb on + strand, within Ga0059261_3146at 3288.581 kb on + strand, within Ga0059261_3146at 3288.581 kb on + strand, within Ga0059261_3146at 3288.581 kb on + strand, within Ga0059261_3146at 3288.581 kb on + strand, within Ga0059261_3146at 3288.581 kb on + strand, within Ga0059261_3146at 3288.582 kb on - strand, within Ga0059261_3146at 3288.582 kb on - strand, within Ga0059261_3146at 3288.582 kb on - strand, within Ga0059261_3146at 3288.582 kb on - strand, within Ga0059261_3146at 3288.582 kb on - strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.589 kb on + strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.590 kb on - strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.881 kb on + strand, within Ga0059261_3146at 3288.882 kb on - strand, within Ga0059261_3146at 3288.882 kb on - strand, within Ga0059261_3146at 3288.882 kb on - strand, within Ga0059261_3146at 3288.882 kb on - strand, within Ga0059261_3146at 3288.882 kb on - strand, within Ga0059261_3146at 3288.882 kb on - strand, within Ga0059261_3146at 3288.920 kb on + strand, within Ga0059261_3146at 3288.920 kb on + strand, within Ga0059261_3146at 3288.921 kb on - strand, within Ga0059261_3146at 3288.932 kb on + strand, within Ga0059261_3146at 3289.001 kb on + strandat 3289.001 kb on + strandat 3289.001 kb on + strandat 3289.002 kb on - strandat 3289.109 kb on + strandat 3289.109 kb on + strandat 3289.110 kb on - strandat 3289.181 kb on - strand, within Ga0059261_3147at 3289.278 kb on + strand, within Ga0059261_3147at 3289.278 kb on + strand, within Ga0059261_3147at 3289.278 kb on + strand, within Ga0059261_3147at 3289.278 kb on + strand, within Ga0059261_3147at 3289.278 kb on + strand, within Ga0059261_3147at 3289.278 kb on + strand, within Ga0059261_3147at 3289.278 kb on + strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.279 kb on - strand, within Ga0059261_3147at 3289.443 kb on + strand, within Ga0059261_3147at 3289.443 kb on + strand, within Ga0059261_3147at 3289.443 kb on + strand, within Ga0059261_3147at 3289.443 kb on + strand, within Ga0059261_3147at 3289.444 kb on - strand, within Ga0059261_3147at 3289.444 kb on - strand, within Ga0059261_3147at 3289.444 kb on - strand, within Ga0059261_3147at 3289.444 kb on - strand, within Ga0059261_3147at 3289.444 kb on - strand, within Ga0059261_3147at 3289.444 kb on - strand, within Ga0059261_3147at 3289.444 kb on - strand, within Ga0059261_3147at 3289.464 kb on + strand, within Ga0059261_3147at 3289.465 kb on - strand, within Ga0059261_3147at 3289.465 kb on - strand, within Ga0059261_3147at 3289.465 kb on - strand, within Ga0059261_3147at 3289.470 kb on + strand, within Ga0059261_3147at 3289.471 kb on - strand, within Ga0059261_3147at 3289.506 kb on + strand, within Ga0059261_3147at 3289.506 kb on + strand, within Ga0059261_3147at 3289.506 kb on + strand, within Ga0059261_3147at 3289.527 kb on + strand, within Ga0059261_3147at 3289.527 kb on + strand, within Ga0059261_3147at 3289.527 kb on + strand, within Ga0059261_3147at 3289.528 kb on - strand, within Ga0059261_3147at 3289.561 kb on + strand, within Ga0059261_3147at 3289.561 kb on + strand, within Ga0059261_3147at 3289.589 kb on + strand, within Ga0059261_3147at 3289.589 kb on + strand, within Ga0059261_3147at 3289.589 kb on + strand, within Ga0059261_3147at 3289.589 kb on + strand, within Ga0059261_3147at 3289.770 kb on + strand, within Ga0059261_3147at 3289.770 kb on + strand, within Ga0059261_3147at 3289.771 kb on - strand, within Ga0059261_3147at 3289.771 kb on - strand, within Ga0059261_3147at 3289.771 kb on - strand, within Ga0059261_3147at 3289.980 kb on + strandat 3289.980 kb on + strandat 3290.008 kb on + strandat 3290.009 kb on - strandat 3290.009 kb on - strandat 3290.009 kb on - strandat 3290.009 kb on - strandat 3290.056 kb on + strandat 3290.056 kb on + strandat 3290.056 kb on + strandat 3290.056 kb on + strandat 3290.056 kb on + strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.057 kb on - strandat 3290.089 kb on + strandat 3290.089 kb on + strandat 3290.090 kb on - strandat 3290.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH7
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3,287,827 - -0.4
3,287,891 + +0.0
3,287,891 + +0.5
3,287,891 + -0.0
3,287,891 + +1.4
3,287,891 + +0.5
3,287,891 + -2.0
3,287,891 + +0.1
3,287,892 - +0.3
3,287,892 - -0.1
3,287,893 + -0.1
3,287,893 + +0.3
3,287,893 + -1.0
3,287,946 - +0.8
3,287,946 - +0.2
3,287,993 + -0.6
3,287,993 + +0.6
3,287,993 + -0.0
3,287,993 + +0.0
3,287,993 + +0.6
3,287,993 + -0.7
3,287,993 + -1.3
3,287,994 - +2.5
3,287,994 - -0.4
3,287,994 - -0.6
3,287,994 - +0.6
3,288,044 + Ga0059261_3146 0.12 -0.5
3,288,044 + Ga0059261_3146 0.12 -0.1
3,288,044 + Ga0059261_3146 0.12 -0.4
3,288,044 + Ga0059261_3146 0.12 -2.0
3,288,045 - Ga0059261_3146 0.12 -0.1
3,288,045 - Ga0059261_3146 0.12 +1.2
3,288,045 - Ga0059261_3146 0.12 +0.0
3,288,045 - Ga0059261_3146 0.12 -1.0
3,288,045 - Ga0059261_3146 0.12 -0.2
3,288,045 - Ga0059261_3146 0.12 -1.0
3,288,122 + Ga0059261_3146 0.18 +0.3
3,288,122 + Ga0059261_3146 0.18 +0.3
3,288,123 - Ga0059261_3146 0.18 +1.0
3,288,302 + Ga0059261_3146 0.33 +0.4
3,288,302 + Ga0059261_3146 0.33 +0.9
3,288,302 + Ga0059261_3146 0.33 -0.4
3,288,302 + Ga0059261_3146 0.33 -1.0
3,288,302 + Ga0059261_3146 0.33 +1.6
3,288,303 - Ga0059261_3146 0.33 +0.3
3,288,303 - Ga0059261_3146 0.33 +0.5
3,288,303 - Ga0059261_3146 0.33 -0.1
3,288,303 - Ga0059261_3146 0.33 +0.0
3,288,303 - Ga0059261_3146 0.33 +0.4
3,288,303 - Ga0059261_3146 0.33 +0.4
3,288,303 - Ga0059261_3146 0.33 +0.7
3,288,368 + Ga0059261_3146 0.38 -0.7
3,288,369 - Ga0059261_3146 0.39 +0.2
3,288,369 - Ga0059261_3146 0.39 +1.4
3,288,380 + Ga0059261_3146 0.39 +0.4
3,288,380 + Ga0059261_3146 0.39 +0.4
3,288,380 + Ga0059261_3146 0.39 +1.0
3,288,380 + Ga0059261_3146 0.39 +0.4
3,288,380 + Ga0059261_3146 0.39 -0.6
3,288,380 + Ga0059261_3146 0.39 -0.8
3,288,380 + Ga0059261_3146 0.39 -0.8
3,288,380 + Ga0059261_3146 0.39 -1.6
3,288,380 + Ga0059261_3146 0.39 +0.3
3,288,380 + Ga0059261_3146 0.39 +0.0
3,288,380 + Ga0059261_3146 0.39 +0.8
3,288,381 - Ga0059261_3146 0.40 +0.0
3,288,381 - Ga0059261_3146 0.40 -0.8
3,288,381 - Ga0059261_3146 0.40 -0.1
3,288,381 - Ga0059261_3146 0.40 +0.2
3,288,381 - Ga0059261_3146 0.40 +0.1
3,288,381 - Ga0059261_3146 0.40 +0.3
3,288,381 - Ga0059261_3146 0.40 +0.2
3,288,381 - Ga0059261_3146 0.40 -0.2
3,288,381 - Ga0059261_3146 0.40 +0.4
3,288,381 - Ga0059261_3146 0.40 -0.6
3,288,498 + Ga0059261_3146 0.49 +0.0
3,288,581 + Ga0059261_3146 0.56 +0.2
3,288,581 + Ga0059261_3146 0.56 +0.1
3,288,581 + Ga0059261_3146 0.56 -1.0
3,288,581 + Ga0059261_3146 0.56 +0.5
3,288,581 + Ga0059261_3146 0.56 +0.4
3,288,582 - Ga0059261_3146 0.56 -0.1
3,288,582 - Ga0059261_3146 0.56 -1.1
3,288,582 - Ga0059261_3146 0.56 -0.1
3,288,582 - Ga0059261_3146 0.56 +1.0
3,288,582 - Ga0059261_3146 0.56 -0.5
3,288,589 + Ga0059261_3146 0.57 -0.7
3,288,589 + Ga0059261_3146 0.57 +1.0
3,288,589 + Ga0059261_3146 0.57 +0.0
3,288,589 + Ga0059261_3146 0.57 -1.0
3,288,589 + Ga0059261_3146 0.57 +0.0
3,288,589 + Ga0059261_3146 0.57 -1.3
3,288,589 + Ga0059261_3146 0.57 +0.0
3,288,589 + Ga0059261_3146 0.57 -0.1
3,288,589 + Ga0059261_3146 0.57 +0.0
3,288,590 - Ga0059261_3146 0.57 +0.2
3,288,590 - Ga0059261_3146 0.57 +2.0
3,288,590 - Ga0059261_3146 0.57 -0.2
3,288,590 - Ga0059261_3146 0.57 -1.0
3,288,590 - Ga0059261_3146 0.57 -1.0
3,288,590 - Ga0059261_3146 0.57 +0.0
3,288,590 - Ga0059261_3146 0.57 +0.6
3,288,590 - Ga0059261_3146 0.57 +0.6
3,288,881 + Ga0059261_3146 0.81 -1.2
3,288,881 + Ga0059261_3146 0.81 -0.8
3,288,881 + Ga0059261_3146 0.81 +0.0
3,288,881 + Ga0059261_3146 0.81 +0.4
3,288,881 + Ga0059261_3146 0.81 -0.2
3,288,881 + Ga0059261_3146 0.81 -0.3
3,288,881 + Ga0059261_3146 0.81 -0.6
3,288,881 + Ga0059261_3146 0.81 -0.8
3,288,881 + Ga0059261_3146 0.81 -0.0
3,288,882 - Ga0059261_3146 0.81 +0.0
3,288,882 - Ga0059261_3146 0.81 -0.2
3,288,882 - Ga0059261_3146 0.81 +0.6
3,288,882 - Ga0059261_3146 0.81 +0.1
3,288,882 - Ga0059261_3146 0.81 +0.0
3,288,882 - Ga0059261_3146 0.81 -0.5
3,288,920 + Ga0059261_3146 0.84 +0.4
3,288,920 + Ga0059261_3146 0.84 -0.8
3,288,921 - Ga0059261_3146 0.84 +0.0
3,288,932 + Ga0059261_3146 0.85 +0.5
3,289,001 + +0.0
3,289,001 + +0.8
3,289,001 + -0.9
3,289,002 - -0.5
3,289,109 + -0.1
3,289,109 + +0.5
3,289,110 - -0.1
3,289,181 - Ga0059261_3147 0.15 +0.0
3,289,278 + Ga0059261_3147 0.26 +0.1
3,289,278 + Ga0059261_3147 0.26 -0.6
3,289,278 + Ga0059261_3147 0.26 +0.8
3,289,278 + Ga0059261_3147 0.26 +0.5
3,289,278 + Ga0059261_3147 0.26 -0.1
3,289,278 + Ga0059261_3147 0.26 +0.3
3,289,278 + Ga0059261_3147 0.26 -0.6
3,289,279 - Ga0059261_3147 0.26 -1.6
3,289,279 - Ga0059261_3147 0.26 -1.6
3,289,279 - Ga0059261_3147 0.26 +0.0
3,289,279 - Ga0059261_3147 0.26 -1.1
3,289,279 - Ga0059261_3147 0.26 -0.1
3,289,279 - Ga0059261_3147 0.26 -0.1
3,289,279 - Ga0059261_3147 0.26 +0.9
3,289,279 - Ga0059261_3147 0.26 +0.0
3,289,279 - Ga0059261_3147 0.26 -0.3
3,289,279 - Ga0059261_3147 0.26 -0.1
3,289,279 - Ga0059261_3147 0.26 -0.4
3,289,443 + Ga0059261_3147 0.46 +1.3
3,289,443 + Ga0059261_3147 0.46 +0.4
3,289,443 + Ga0059261_3147 0.46 +0.1
3,289,443 + Ga0059261_3147 0.46 -1.2
3,289,444 - Ga0059261_3147 0.46 -0.6
3,289,444 - Ga0059261_3147 0.46 -1.0
3,289,444 - Ga0059261_3147 0.46 -0.7
3,289,444 - Ga0059261_3147 0.46 +0.5
3,289,444 - Ga0059261_3147 0.46 +0.0
3,289,444 - Ga0059261_3147 0.46 -1.3
3,289,444 - Ga0059261_3147 0.46 -0.1
3,289,464 + Ga0059261_3147 0.48 +1.4
3,289,465 - Ga0059261_3147 0.48 +0.0
3,289,465 - Ga0059261_3147 0.48 +0.1
3,289,465 - Ga0059261_3147 0.48 +0.6
3,289,470 + Ga0059261_3147 0.49 -1.0
3,289,471 - Ga0059261_3147 0.49 -0.5
3,289,506 + Ga0059261_3147 0.53 +0.3
3,289,506 + Ga0059261_3147 0.53 +0.5
3,289,506 + Ga0059261_3147 0.53 +0.4
3,289,527 + Ga0059261_3147 0.55 +0.8
3,289,527 + Ga0059261_3147 0.55 -1.3
3,289,527 + Ga0059261_3147 0.55 -0.7
3,289,528 - Ga0059261_3147 0.56 +0.4
3,289,561 + Ga0059261_3147 0.59 +0.0
3,289,561 + Ga0059261_3147 0.59 -0.4
3,289,589 + Ga0059261_3147 0.63 -0.2
3,289,589 + Ga0059261_3147 0.63 -1.2
3,289,589 + Ga0059261_3147 0.63 -0.2
3,289,589 + Ga0059261_3147 0.63 -0.3
3,289,770 + Ga0059261_3147 0.84 -0.1
3,289,770 + Ga0059261_3147 0.84 -0.3
3,289,771 - Ga0059261_3147 0.84 -0.6
3,289,771 - Ga0059261_3147 0.84 +0.4
3,289,771 - Ga0059261_3147 0.84 +0.3
3,289,980 + -0.8
3,289,980 + -0.8
3,290,008 + -0.1
3,290,009 - +0.4
3,290,009 - -0.7
3,290,009 - -0.8
3,290,009 - -0.6
3,290,056 + -0.4
3,290,056 + -0.3
3,290,056 + -0.2
3,290,056 + +0.1
3,290,056 + -0.2
3,290,057 - -0.0
3,290,057 - +0.8
3,290,057 - -0.5
3,290,057 - +0.5
3,290,057 - +0.0
3,290,057 - +0.3
3,290,057 - -2.0
3,290,057 - +0.1
3,290,057 - -0.2
3,290,057 - -0.2
3,290,057 - +1.4
3,290,089 + -0.2
3,290,089 + +0.8
3,290,090 - -0.5
3,290,090 - -0.0

Or see this region's nucleotide sequence