Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17260

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17250 and CSW01_17255 are separated by 164 nucleotidesCSW01_17255 and CSW01_17260 are separated by 60 nucleotidesCSW01_17260 and CSW01_17265 are separated by 194 nucleotidesCSW01_17265 and CSW01_17270 are separated by 4 nucleotides CSW01_17250: CSW01_17250 - phosphonoacetaldehyde hydrolase, at 542,194 to 543,009 _17250 CSW01_17255: CSW01_17255 - nucleoside diphosphate kinase regulator, at 543,174 to 543,581 _17255 CSW01_17260: CSW01_17260 - noncanonical pyrimidine nucleotidase, YjjG family, at 543,642 to 544,316 _17260 CSW01_17265: CSW01_17265 - hypothetical protein, at 544,511 to 544,693 _17265 CSW01_17270: CSW01_17270 - isoprenoid biosynthesis protein ElbB, at 544,698 to 545,348 _17270 Position (kb) 543 544 545Strain fitness (log2 ratio) -1 0 1 2at 542.719 kb on + strand, within CSW01_17250at 542.806 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.944 kb on + strandat 542.984 kb on + strandat 543.072 kb on + strandat 543.125 kb on + strandat 543.182 kb on + strandat 543.228 kb on - strand, within CSW01_17255at 543.269 kb on - strand, within CSW01_17255at 543.292 kb on + strand, within CSW01_17255at 543.401 kb on - strand, within CSW01_17255at 543.414 kb on + strand, within CSW01_17255at 543.422 kb on - strand, within CSW01_17255at 543.491 kb on + strand, within CSW01_17255at 543.494 kb on - strand, within CSW01_17255at 543.834 kb on + strand, within CSW01_17260at 543.877 kb on - strand, within CSW01_17260at 543.990 kb on + strand, within CSW01_17260at 544.095 kb on - strand, within CSW01_17260at 544.123 kb on + strand, within CSW01_17260at 544.131 kb on - strand, within CSW01_17260at 544.141 kb on - strand, within CSW01_17260at 544.278 kb on + strandat 544.278 kb on + strandat 544.569 kb on - strand, within CSW01_17265at 544.585 kb on + strand, within CSW01_17265at 544.615 kb on + strand, within CSW01_17265at 544.629 kb on - strand, within CSW01_17265at 544.659 kb on + strand, within CSW01_17265at 544.659 kb on + strand, within CSW01_17265at 544.667 kb on - strand, within CSW01_17265at 544.734 kb on + strandat 544.734 kb on + strandat 544.746 kb on + strandat 544.751 kb on + strandat 544.810 kb on + strand, within CSW01_17270at 544.810 kb on + strand, within CSW01_17270at 544.810 kb on + strand, within CSW01_17270at 544.824 kb on + strand, within CSW01_17270at 544.857 kb on + strand, within CSW01_17270at 544.857 kb on + strand, within CSW01_17270at 544.857 kb on + strand, within CSW01_17270at 544.865 kb on - strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.027 kb on + strand, within CSW01_17270at 545.032 kb on + strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.035 kb on - strand, within CSW01_17270at 545.091 kb on + strand, within CSW01_17270at 545.099 kb on - strand, within CSW01_17270at 545.099 kb on - strand, within CSW01_17270at 545.101 kb on + strand, within CSW01_17270at 545.101 kb on + strand, within CSW01_17270at 545.171 kb on - strand, within CSW01_17270at 545.205 kb on + strand, within CSW01_17270at 545.220 kb on + strand, within CSW01_17270at 545.220 kb on + strand, within CSW01_17270at 545.228 kb on - strand, within CSW01_17270

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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542,719 + CSW01_17250 0.64 +0.5
542,806 + CSW01_17250 0.75 +0.2
542,840 + CSW01_17250 0.79 -0.3
542,840 + CSW01_17250 0.79 -0.9
542,840 + CSW01_17250 0.79 -0.3
542,840 + CSW01_17250 0.79 +0.5
542,848 - CSW01_17250 0.80 -0.3
542,848 - CSW01_17250 0.80 +0.8
542,848 - CSW01_17250 0.80 -0.3
542,848 - CSW01_17250 0.80 -0.2
542,944 + +0.8
542,984 + +0.4
543,072 + +0.3
543,125 + +0.2
543,182 + -0.2
543,228 - CSW01_17255 0.13 +0.1
543,269 - CSW01_17255 0.23 -0.5
543,292 + CSW01_17255 0.29 +0.7
543,401 - CSW01_17255 0.56 -0.7
543,414 + CSW01_17255 0.59 -0.5
543,422 - CSW01_17255 0.61 +1.2
543,491 + CSW01_17255 0.78 +1.2
543,494 - CSW01_17255 0.78 -1.3
543,834 + CSW01_17260 0.28 -0.6
543,877 - CSW01_17260 0.35 +0.8
543,990 + CSW01_17260 0.52 -0.3
544,095 - CSW01_17260 0.67 -0.0
544,123 + CSW01_17260 0.71 +1.4
544,131 - CSW01_17260 0.72 +0.3
544,141 - CSW01_17260 0.74 +0.3
544,278 + +1.4
544,278 + -1.7
544,569 - CSW01_17265 0.32 +0.4
544,585 + CSW01_17265 0.40 +1.1
544,615 + CSW01_17265 0.57 +0.7
544,629 - CSW01_17265 0.64 +0.0
544,659 + CSW01_17265 0.81 +1.4
544,659 + CSW01_17265 0.81 +0.2
544,667 - CSW01_17265 0.85 -0.6
544,734 + -0.2
544,734 + +1.2
544,746 + +0.0
544,751 + +0.5
544,810 + CSW01_17270 0.17 +0.0
544,810 + CSW01_17270 0.17 +0.1
544,810 + CSW01_17270 0.17 +1.0
544,824 + CSW01_17270 0.19 +0.9
544,857 + CSW01_17270 0.24 -0.0
544,857 + CSW01_17270 0.24 +0.3
544,857 + CSW01_17270 0.24 -0.3
544,865 - CSW01_17270 0.26 -0.3
545,027 + CSW01_17270 0.51 -0.9
545,027 + CSW01_17270 0.51 +0.5
545,027 + CSW01_17270 0.51 +0.5
545,027 + CSW01_17270 0.51 +0.3
545,027 + CSW01_17270 0.51 +1.0
545,032 + CSW01_17270 0.51 +0.9
545,035 - CSW01_17270 0.52 +0.7
545,035 - CSW01_17270 0.52 +0.4
545,035 - CSW01_17270 0.52 +0.7
545,035 - CSW01_17270 0.52 +0.2
545,035 - CSW01_17270 0.52 +0.4
545,035 - CSW01_17270 0.52 +0.3
545,035 - CSW01_17270 0.52 +0.2
545,035 - CSW01_17270 0.52 -0.6
545,091 + CSW01_17270 0.60 -0.2
545,099 - CSW01_17270 0.62 +0.3
545,099 - CSW01_17270 0.62 +1.8
545,101 + CSW01_17270 0.62 -0.0
545,101 + CSW01_17270 0.62 +0.6
545,171 - CSW01_17270 0.73 -0.3
545,205 + CSW01_17270 0.78 +0.5
545,220 + CSW01_17270 0.80 -1.3
545,220 + CSW01_17270 0.80 +2.2
545,228 - CSW01_17270 0.81 -1.6

Or see this region's nucleotide sequence