Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16795

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16790 and CSW01_16795 are separated by 289 nucleotidesCSW01_16795 and CSW01_16800 are separated by 462 nucleotides CSW01_16790: CSW01_16790 - IS3 family transposase, at 433,636 to 434,813 _16790 CSW01_16795: CSW01_16795 - nucleotide pyrophosphatase, at 435,103 to 438,009 _16795 CSW01_16800: CSW01_16800 - anaerobic ribonucleoside-triphosphate reductase, at 438,472 to 440,592 _16800 Position (kb) 435 436 437 438 439Strain fitness (log2 ratio) -2 -1 0 1 2at 434.786 kb on + strandat 434.966 kb on + strandat 434.974 kb on + strandat 435.023 kb on - strandat 435.077 kb on - strandat 435.141 kb on - strandat 435.141 kb on - strandat 435.324 kb on + strandat 435.353 kb on + strandat 435.353 kb on + strandat 435.425 kb on + strand, within CSW01_16795at 435.532 kb on + strand, within CSW01_16795at 435.540 kb on - strand, within CSW01_16795at 435.540 kb on - strand, within CSW01_16795at 435.542 kb on + strand, within CSW01_16795at 435.572 kb on + strand, within CSW01_16795at 435.666 kb on - strand, within CSW01_16795at 435.698 kb on + strand, within CSW01_16795at 435.726 kb on + strand, within CSW01_16795at 435.787 kb on + strand, within CSW01_16795at 435.941 kb on + strand, within CSW01_16795at 435.959 kb on - strand, within CSW01_16795at 436.095 kb on - strand, within CSW01_16795at 436.138 kb on - strand, within CSW01_16795at 436.172 kb on - strand, within CSW01_16795at 436.172 kb on - strand, within CSW01_16795at 436.298 kb on + strand, within CSW01_16795at 436.324 kb on + strand, within CSW01_16795at 436.325 kb on - strand, within CSW01_16795at 436.342 kb on + strand, within CSW01_16795at 436.344 kb on - strand, within CSW01_16795at 436.400 kb on + strand, within CSW01_16795at 436.455 kb on + strand, within CSW01_16795at 436.501 kb on - strand, within CSW01_16795at 436.603 kb on + strand, within CSW01_16795at 436.636 kb on - strand, within CSW01_16795at 436.648 kb on - strand, within CSW01_16795at 436.780 kb on + strand, within CSW01_16795at 436.780 kb on + strand, within CSW01_16795at 436.780 kb on + strand, within CSW01_16795at 436.788 kb on - strand, within CSW01_16795at 436.788 kb on - strand, within CSW01_16795at 436.788 kb on - strand, within CSW01_16795at 436.804 kb on - strand, within CSW01_16795at 436.804 kb on - strand, within CSW01_16795at 436.881 kb on + strand, within CSW01_16795at 436.963 kb on + strand, within CSW01_16795at 437.274 kb on - strand, within CSW01_16795at 437.357 kb on + strand, within CSW01_16795at 437.365 kb on - strand, within CSW01_16795at 437.395 kb on - strand, within CSW01_16795at 437.416 kb on + strand, within CSW01_16795at 437.450 kb on + strand, within CSW01_16795at 437.455 kb on + strand, within CSW01_16795at 437.463 kb on - strand, within CSW01_16795at 437.512 kb on + strand, within CSW01_16795at 437.526 kb on - strand, within CSW01_16795at 437.574 kb on + strand, within CSW01_16795at 437.574 kb on + strand, within CSW01_16795at 437.577 kb on - strand, within CSW01_16795at 437.770 kb on - strandat 437.792 kb on - strandat 437.970 kb on + strandat 437.978 kb on - strandat 438.050 kb on + strandat 438.055 kb on + strandat 438.057 kb on + strandat 438.063 kb on - strandat 438.063 kb on - strandat 438.063 kb on - strandat 438.063 kb on - strandat 438.094 kb on + strandat 438.231 kb on - strandat 438.290 kb on - strandat 438.366 kb on - strandat 438.546 kb on - strandat 438.634 kb on + strandat 438.659 kb on + strandat 438.659 kb on + strandat 438.659 kb on + strandat 438.660 kb on - strandat 438.686 kb on - strand, within CSW01_16800at 438.697 kb on + strand, within CSW01_16800at 438.697 kb on + strand, within CSW01_16800at 438.705 kb on - strand, within CSW01_16800at 438.705 kb on - strand, within CSW01_16800at 438.845 kb on + strand, within CSW01_16800at 438.853 kb on - strand, within CSW01_16800at 438.985 kb on + strand, within CSW01_16800at 438.993 kb on - strand, within CSW01_16800at 438.995 kb on - strand, within CSW01_16800

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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434,786 + -1.2
434,966 + -0.3
434,974 + -2.7
435,023 - +0.8
435,077 - -0.2
435,141 - +0.1
435,141 - +0.3
435,324 + -0.2
435,353 + -0.2
435,353 + +0.5
435,425 + CSW01_16795 0.11 +0.8
435,532 + CSW01_16795 0.15 +0.3
435,540 - CSW01_16795 0.15 -0.1
435,540 - CSW01_16795 0.15 +0.6
435,542 + CSW01_16795 0.15 -0.2
435,572 + CSW01_16795 0.16 -0.4
435,666 - CSW01_16795 0.19 -0.4
435,698 + CSW01_16795 0.20 +1.9
435,726 + CSW01_16795 0.21 -0.5
435,787 + CSW01_16795 0.24 -0.9
435,941 + CSW01_16795 0.29 -0.1
435,959 - CSW01_16795 0.29 -0.5
436,095 - CSW01_16795 0.34 +1.0
436,138 - CSW01_16795 0.36 -0.9
436,172 - CSW01_16795 0.37 -0.9
436,172 - CSW01_16795 0.37 +1.3
436,298 + CSW01_16795 0.41 +0.1
436,324 + CSW01_16795 0.42 -0.9
436,325 - CSW01_16795 0.42 -0.3
436,342 + CSW01_16795 0.43 +1.3
436,344 - CSW01_16795 0.43 +0.9
436,400 + CSW01_16795 0.45 +0.2
436,455 + CSW01_16795 0.47 -0.5
436,501 - CSW01_16795 0.48 +2.7
436,603 + CSW01_16795 0.52 +0.3
436,636 - CSW01_16795 0.53 -1.5
436,648 - CSW01_16795 0.53 -0.1
436,780 + CSW01_16795 0.58 +1.6
436,780 + CSW01_16795 0.58 +0.2
436,780 + CSW01_16795 0.58 +0.1
436,788 - CSW01_16795 0.58 -0.5
436,788 - CSW01_16795 0.58 -0.2
436,788 - CSW01_16795 0.58 -1.1
436,804 - CSW01_16795 0.59 -0.1
436,804 - CSW01_16795 0.59 -0.2
436,881 + CSW01_16795 0.61 -0.0
436,963 + CSW01_16795 0.64 -0.4
437,274 - CSW01_16795 0.75 -0.4
437,357 + CSW01_16795 0.78 +0.4
437,365 - CSW01_16795 0.78 +0.9
437,395 - CSW01_16795 0.79 +0.1
437,416 + CSW01_16795 0.80 +1.0
437,450 + CSW01_16795 0.81 -0.4
437,455 + CSW01_16795 0.81 -0.4
437,463 - CSW01_16795 0.81 +1.3
437,512 + CSW01_16795 0.83 -1.0
437,526 - CSW01_16795 0.83 +0.2
437,574 + CSW01_16795 0.85 +1.0
437,574 + CSW01_16795 0.85 +0.0
437,577 - CSW01_16795 0.85 -0.2
437,770 - -0.2
437,792 - +0.0
437,970 + +0.4
437,978 - +0.4
438,050 + +1.2
438,055 + +0.5
438,057 + +0.1
438,063 - -0.2
438,063 - -0.2
438,063 - +1.5
438,063 - -0.1
438,094 + -0.2
438,231 - +0.4
438,290 - +0.4
438,366 - +1.0
438,546 - +0.8
438,634 + -0.6
438,659 + -0.7
438,659 + +1.1
438,659 + +1.1
438,660 - +0.1
438,686 - CSW01_16800 0.10 -0.4
438,697 + CSW01_16800 0.11 +0.1
438,697 + CSW01_16800 0.11 -0.3
438,705 - CSW01_16800 0.11 +0.3
438,705 - CSW01_16800 0.11 +0.2
438,845 + CSW01_16800 0.18 -0.3
438,853 - CSW01_16800 0.18 -0.5
438,985 + CSW01_16800 0.24 +0.4
438,993 - CSW01_16800 0.25 +0.2
438,995 - CSW01_16800 0.25 -0.0

Or see this region's nucleotide sequence