Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15575 and CSW01_15580 are separated by 69 nucleotides CSW01_15580 and CSW01_15585 are separated by 218 nucleotides CSW01_15585 and CSW01_15590 are separated by 96 nucleotides CSW01_15590 and CSW01_15595 are separated by 51 nucleotides CSW01_15595 and CSW01_15600 are separated by 2 nucleotides CSW01_15600 and CSW01_15605 are separated by 58 nucleotides CSW01_15605 and CSW01_15610 overlap by 35 nucleotides CSW01_15610 and CSW01_15615 are separated by 50 nucleotides CSW01_15615 and CSW01_15620 are separated by 72 nucleotides
CSW01_15575: CSW01_15575 - DUF1778 domain-containing protein, at 324,564 to 324,836
_15575
CSW01_15580: CSW01_15580 - hypothetical protein, at 324,906 to 325,010
_15580
CSW01_15585: CSW01_15585 - DUF645 domain-containing protein, at 325,229 to 325,354
_15585
CSW01_15590: CSW01_15590 - hypothetical protein, at 325,451 to 325,546
_15590
CSW01_15595: CSW01_15595 - hypothetical protein, at 325,598 to 326,050
_15595
CSW01_15600: CSW01_15600 - hypothetical protein, at 326,053 to 326,139
_15600
CSW01_15605: CSW01_15605 - type II toxin-antitoxin system YafQ family toxin, at 326,198 to 326,494
_15605
CSW01_15610: CSW01_15610 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 326,460 to 326,738
_15610
CSW01_15615: CSW01_15615 - DUF3265 domain-containing protein, at 326,789 to 326,906
_15615
CSW01_15620: CSW01_15620 - DUF3709 domain-containing protein, at 326,979 to 327,302
_15620
Position (kb) 325
326
327 Strain fitness (log2 ratio) -1
0
1 at 325.308 kb on + strand, within CSW01_15585 at 325.316 kb on - strand, within CSW01_15585 at 325.316 kb on - strand, within CSW01_15585 at 325.316 kb on - strand, within CSW01_15585 at 325.598 kb on - strand at 325.654 kb on + strand, within CSW01_15595 at 325.662 kb on - strand, within CSW01_15595 at 325.662 kb on - strand, within CSW01_15595 at 326.075 kb on - strand, within CSW01_15600 at 326.187 kb on + strand at 326.232 kb on + strand, within CSW01_15605 at 326.240 kb on - strand, within CSW01_15605 at 326.240 kb on - strand, within CSW01_15605 at 326.267 kb on + strand, within CSW01_15605 at 326.269 kb on - strand, within CSW01_15605 at 326.269 kb on - strand, within CSW01_15605 at 326.277 kb on + strand, within CSW01_15605 at 326.285 kb on - strand, within CSW01_15605 at 326.465 kb on - strand at 326.781 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A remove 325,308 + CSW01_15585 0.63 +0.1 325,316 - CSW01_15585 0.69 -1.4 325,316 - CSW01_15585 0.69 +0.1 325,316 - CSW01_15585 0.69 +1.0 325,598 - +0.2 325,654 + CSW01_15595 0.12 +1.0 325,662 - CSW01_15595 0.14 +0.2 325,662 - CSW01_15595 0.14 +1.5 326,075 - CSW01_15600 0.25 +0.1 326,187 + -0.6 326,232 + CSW01_15605 0.11 -0.0 326,240 - CSW01_15605 0.14 +1.0 326,240 - CSW01_15605 0.14 +0.1 326,267 + CSW01_15605 0.23 +0.7 326,269 - CSW01_15605 0.24 +0.1 326,269 - CSW01_15605 0.24 +1.3 326,277 + CSW01_15605 0.27 +0.3 326,285 - CSW01_15605 0.29 -0.2 326,465 - +0.2 326,781 + +0.1
Or see this region's nucleotide sequence