Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15330

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15315 and CSW01_15320 are separated by 286 nucleotidesCSW01_15320 and CSW01_15325 are separated by 43 nucleotidesCSW01_15325 and CSW01_15330 are separated by 43 nucleotidesCSW01_15330 and CSW01_15335 are separated by 143 nucleotidesCSW01_15335 and CSW01_15340 are separated by 36 nucleotides CSW01_15315: CSW01_15315 - carbonic anhydrase, at 290,816 to 291,535 _15315 CSW01_15320: CSW01_15320 - IS200/IS605 family transposase IS1004, at 291,822 to 292,259 _15320 CSW01_15325: CSW01_15325 - rfbP protein, at 292,303 to 292,395 _15325 CSW01_15330: CSW01_15330 - glycine dehydrogenase (decarboxylating), at 292,439 to 295,303 _15330 CSW01_15335: CSW01_15335 - glycine cleavage system protein H, at 295,447 to 295,827 _15335 CSW01_15340: CSW01_15340 - serine hydroxymethyltransferase, at 295,864 to 297,171 _15340 Position (kb) 292 293 294 295 296Strain fitness (log2 ratio) -2 -1 0 1 2at 291.460 kb on + strand, within CSW01_15315at 291.460 kb on + strand, within CSW01_15315at 291.460 kb on + strand, within CSW01_15315at 291.468 kb on - strandat 291.544 kb on - strandat 291.637 kb on + strandat 292.364 kb on + strand, within CSW01_15325at 292.450 kb on - strandat 292.483 kb on - strandat 292.487 kb on - strandat 292.499 kb on - strandat 292.541 kb on + strandat 292.772 kb on - strand, within CSW01_15330at 292.784 kb on - strand, within CSW01_15330at 292.802 kb on + strand, within CSW01_15330at 292.891 kb on - strand, within CSW01_15330at 293.001 kb on + strand, within CSW01_15330at 293.097 kb on + strand, within CSW01_15330at 293.097 kb on + strand, within CSW01_15330at 293.174 kb on + strand, within CSW01_15330at 293.176 kb on + strand, within CSW01_15330at 293.201 kb on + strand, within CSW01_15330at 293.209 kb on - strand, within CSW01_15330at 293.215 kb on + strand, within CSW01_15330at 293.215 kb on + strand, within CSW01_15330at 293.223 kb on - strand, within CSW01_15330at 293.240 kb on + strand, within CSW01_15330at 293.248 kb on + strand, within CSW01_15330at 293.248 kb on - strand, within CSW01_15330at 293.290 kb on - strand, within CSW01_15330at 293.360 kb on + strand, within CSW01_15330at 293.364 kb on - strand, within CSW01_15330at 293.511 kb on - strand, within CSW01_15330at 293.574 kb on + strand, within CSW01_15330at 293.607 kb on - strand, within CSW01_15330at 293.612 kb on - strand, within CSW01_15330at 293.633 kb on - strand, within CSW01_15330at 293.633 kb on - strand, within CSW01_15330at 293.633 kb on - strand, within CSW01_15330at 293.650 kb on + strand, within CSW01_15330at 293.674 kb on + strand, within CSW01_15330at 293.711 kb on + strand, within CSW01_15330at 293.729 kb on - strand, within CSW01_15330at 293.770 kb on + strand, within CSW01_15330at 293.874 kb on + strand, within CSW01_15330at 293.876 kb on + strand, within CSW01_15330at 293.876 kb on + strand, within CSW01_15330at 293.877 kb on - strand, within CSW01_15330at 293.882 kb on - strand, within CSW01_15330at 293.882 kb on - strand, within CSW01_15330at 293.982 kb on - strand, within CSW01_15330at 294.032 kb on - strand, within CSW01_15330at 294.050 kb on + strand, within CSW01_15330at 294.055 kb on + strand, within CSW01_15330at 294.096 kb on + strand, within CSW01_15330at 294.096 kb on + strand, within CSW01_15330at 294.104 kb on - strand, within CSW01_15330at 294.104 kb on - strand, within CSW01_15330at 294.104 kb on - strand, within CSW01_15330at 294.104 kb on - strand, within CSW01_15330at 294.104 kb on - strand, within CSW01_15330at 294.123 kb on + strand, within CSW01_15330at 294.134 kb on - strand, within CSW01_15330at 294.134 kb on - strand, within CSW01_15330at 294.190 kb on - strand, within CSW01_15330at 294.190 kb on - strand, within CSW01_15330at 294.190 kb on - strand, within CSW01_15330at 294.209 kb on + strand, within CSW01_15330at 294.226 kb on + strand, within CSW01_15330at 294.234 kb on - strand, within CSW01_15330at 294.234 kb on - strand, within CSW01_15330at 294.239 kb on - strand, within CSW01_15330at 294.260 kb on - strand, within CSW01_15330at 294.303 kb on + strand, within CSW01_15330at 294.303 kb on + strand, within CSW01_15330at 294.311 kb on - strand, within CSW01_15330at 294.311 kb on - strand, within CSW01_15330at 294.343 kb on + strand, within CSW01_15330at 294.343 kb on + strand, within CSW01_15330at 294.351 kb on - strand, within CSW01_15330at 294.351 kb on - strand, within CSW01_15330at 294.351 kb on - strand, within CSW01_15330at 294.360 kb on + strand, within CSW01_15330at 294.365 kb on + strand, within CSW01_15330at 294.444 kb on - strand, within CSW01_15330at 294.468 kb on - strand, within CSW01_15330at 294.478 kb on - strand, within CSW01_15330at 294.490 kb on - strand, within CSW01_15330at 294.496 kb on + strand, within CSW01_15330at 294.507 kb on - strand, within CSW01_15330at 294.527 kb on + strand, within CSW01_15330at 294.540 kb on + strand, within CSW01_15330at 294.540 kb on + strand, within CSW01_15330at 294.548 kb on - strand, within CSW01_15330at 294.548 kb on - strand, within CSW01_15330at 294.589 kb on - strand, within CSW01_15330at 294.589 kb on - strand, within CSW01_15330at 294.650 kb on - strand, within CSW01_15330at 294.664 kb on - strand, within CSW01_15330at 294.749 kb on - strand, within CSW01_15330at 294.751 kb on + strand, within CSW01_15330at 294.759 kb on - strand, within CSW01_15330at 294.816 kb on + strand, within CSW01_15330at 294.923 kb on - strand, within CSW01_15330at 294.989 kb on - strand, within CSW01_15330at 295.034 kb on + strandat 295.043 kb on - strandat 295.059 kb on + strandat 295.110 kb on + strandat 295.116 kb on - strandat 295.118 kb on - strandat 295.162 kb on - strandat 295.162 kb on - strandat 295.162 kb on - strandat 295.177 kb on - strandat 295.276 kb on + strandat 295.460 kb on + strandat 295.479 kb on - strandat 295.501 kb on - strand, within CSW01_15335at 295.544 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.569 kb on - strand, within CSW01_15335at 295.612 kb on + strand, within CSW01_15335at 295.667 kb on - strand, within CSW01_15335at 295.714 kb on + strand, within CSW01_15335at 295.810 kb on + strandat 295.891 kb on - strandat 295.925 kb on + strandat 295.926 kb on + strandat 295.938 kb on + strandat 295.946 kb on - strandat 295.992 kb on + strandat 296.009 kb on - strand, within CSW01_15340at 296.075 kb on - strand, within CSW01_15340at 296.113 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.146 kb on + strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
remove
291,460 + CSW01_15315 0.89 +0.3
291,460 + CSW01_15315 0.89 +1.1
291,460 + CSW01_15315 0.89 +0.9
291,468 - +0.2
291,544 - +0.2
291,637 + +1.9
292,364 + CSW01_15325 0.66 +1.1
292,450 - +0.3
292,483 - +0.2
292,487 - +1.1
292,499 - -0.1
292,541 + -0.3
292,772 - CSW01_15330 0.12 -0.8
292,784 - CSW01_15330 0.12 +1.3
292,802 + CSW01_15330 0.13 -0.2
292,891 - CSW01_15330 0.16 -1.1
293,001 + CSW01_15330 0.20 +0.3
293,097 + CSW01_15330 0.23 -0.1
293,097 + CSW01_15330 0.23 +0.6
293,174 + CSW01_15330 0.26 -0.4
293,176 + CSW01_15330 0.26 -0.4
293,201 + CSW01_15330 0.27 -0.4
293,209 - CSW01_15330 0.27 -0.8
293,215 + CSW01_15330 0.27 +0.1
293,215 + CSW01_15330 0.27 +1.0
293,223 - CSW01_15330 0.27 -0.1
293,240 + CSW01_15330 0.28 -0.5
293,248 + CSW01_15330 0.28 -0.2
293,248 - CSW01_15330 0.28 +0.3
293,290 - CSW01_15330 0.30 +1.1
293,360 + CSW01_15330 0.32 -0.5
293,364 - CSW01_15330 0.32 +0.0
293,511 - CSW01_15330 0.37 +1.5
293,574 + CSW01_15330 0.40 -0.6
293,607 - CSW01_15330 0.41 +2.3
293,612 - CSW01_15330 0.41 +0.9
293,633 - CSW01_15330 0.42 -0.5
293,633 - CSW01_15330 0.42 +0.0
293,633 - CSW01_15330 0.42 +1.3
293,650 + CSW01_15330 0.42 +1.0
293,674 + CSW01_15330 0.43 -0.2
293,711 + CSW01_15330 0.44 -0.7
293,729 - CSW01_15330 0.45 +0.3
293,770 + CSW01_15330 0.46 -0.3
293,874 + CSW01_15330 0.50 -0.5
293,876 + CSW01_15330 0.50 -0.7
293,876 + CSW01_15330 0.50 +0.9
293,877 - CSW01_15330 0.50 -0.4
293,882 - CSW01_15330 0.50 +0.0
293,882 - CSW01_15330 0.50 +2.5
293,982 - CSW01_15330 0.54 +0.8
294,032 - CSW01_15330 0.56 -0.2
294,050 + CSW01_15330 0.56 -0.5
294,055 + CSW01_15330 0.56 +0.3
294,096 + CSW01_15330 0.58 -0.6
294,096 + CSW01_15330 0.58 +0.4
294,104 - CSW01_15330 0.58 -1.0
294,104 - CSW01_15330 0.58 +1.6
294,104 - CSW01_15330 0.58 -0.6
294,104 - CSW01_15330 0.58 -0.9
294,104 - CSW01_15330 0.58 -1.0
294,123 + CSW01_15330 0.59 +1.0
294,134 - CSW01_15330 0.59 -0.1
294,134 - CSW01_15330 0.59 -0.5
294,190 - CSW01_15330 0.61 +0.1
294,190 - CSW01_15330 0.61 +0.5
294,190 - CSW01_15330 0.61 +0.7
294,209 + CSW01_15330 0.62 +0.0
294,226 + CSW01_15330 0.62 +0.0
294,234 - CSW01_15330 0.63 -0.1
294,234 - CSW01_15330 0.63 -0.1
294,239 - CSW01_15330 0.63 +0.3
294,260 - CSW01_15330 0.64 -0.4
294,303 + CSW01_15330 0.65 +0.1
294,303 + CSW01_15330 0.65 +0.6
294,311 - CSW01_15330 0.65 +1.0
294,311 - CSW01_15330 0.65 -1.0
294,343 + CSW01_15330 0.66 -0.1
294,343 + CSW01_15330 0.66 -0.2
294,351 - CSW01_15330 0.67 +0.6
294,351 - CSW01_15330 0.67 +0.8
294,351 - CSW01_15330 0.67 -0.1
294,360 + CSW01_15330 0.67 -1.8
294,365 + CSW01_15330 0.67 -1.0
294,444 - CSW01_15330 0.70 -1.0
294,468 - CSW01_15330 0.71 -0.2
294,478 - CSW01_15330 0.71 +0.4
294,490 - CSW01_15330 0.72 +1.1
294,496 + CSW01_15330 0.72 +0.7
294,507 - CSW01_15330 0.72 +0.9
294,527 + CSW01_15330 0.73 -0.4
294,540 + CSW01_15330 0.73 +1.6
294,540 + CSW01_15330 0.73 -1.6
294,548 - CSW01_15330 0.74 +1.6
294,548 - CSW01_15330 0.74 -0.8
294,589 - CSW01_15330 0.75 +0.9
294,589 - CSW01_15330 0.75 -0.3
294,650 - CSW01_15330 0.77 -0.8
294,664 - CSW01_15330 0.78 +1.8
294,749 - CSW01_15330 0.81 -0.9
294,751 + CSW01_15330 0.81 -0.8
294,759 - CSW01_15330 0.81 +2.3
294,816 + CSW01_15330 0.83 +0.7
294,923 - CSW01_15330 0.87 -0.4
294,989 - CSW01_15330 0.89 +0.1
295,034 + -0.6
295,043 - +0.3
295,059 + +0.9
295,110 + -1.6
295,116 - +1.0
295,118 - +0.6
295,162 - -1.6
295,162 - +0.0
295,162 - +0.6
295,177 - -0.4
295,276 + +0.1
295,460 + -0.4
295,479 - +0.9
295,501 - CSW01_15335 0.14 +0.8
295,544 + CSW01_15335 0.25 -0.1
295,566 + CSW01_15335 0.31 -0.1
295,566 + CSW01_15335 0.31 -0.1
295,566 + CSW01_15335 0.31 -0.7
295,569 - CSW01_15335 0.32 -1.2
295,612 + CSW01_15335 0.43 +0.0
295,667 - CSW01_15335 0.58 -1.6
295,714 + CSW01_15335 0.70 -1.1
295,810 + -0.1
295,891 - -0.3
295,925 + +0.7
295,926 + +0.0
295,938 + -1.1
295,946 - +0.3
295,992 + -2.0
296,009 - CSW01_15340 0.11 -0.4
296,075 - CSW01_15340 0.16 -0.2
296,113 + CSW01_15340 0.19 +0.4
296,119 + CSW01_15340 0.19 +1.1
296,119 + CSW01_15340 0.19 +1.6
296,119 + CSW01_15340 0.19 +0.2
296,127 - CSW01_15340 0.20 +0.8
296,127 - CSW01_15340 0.20 -0.5
296,127 - CSW01_15340 0.20 +0.4
296,146 + CSW01_15340 0.22 +0.1
296,291 - CSW01_15340 0.33 -0.5
296,291 - CSW01_15340 0.33 +1.5
296,291 - CSW01_15340 0.33 +0.8

Or see this region's nucleotide sequence