Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15095

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15085 and CSW01_15090 are separated by 9 nucleotidesCSW01_15090 and CSW01_15095 are separated by 75 nucleotidesCSW01_15095 and CSW01_15100 are separated by 84 nucleotidesCSW01_15100 and CSW01_15105 are separated by 553 nucleotides CSW01_15085: CSW01_15085 - lipase, at 242,103 to 243,041 _15085 CSW01_15090: CSW01_15090 - lipase chaperone, at 243,051 to 243,905 _15090 CSW01_15095: CSW01_15095 - protease, at 243,981 to 246,737 _15095 CSW01_15100: CSW01_15100 - hypothetical protein, at 246,822 to 247,127 _15100 CSW01_15105: CSW01_15105 - class II glutamine amidotransferase, at 247,681 to 248,445 _15105 Position (kb) 243 244 245 246 247Strain fitness (log2 ratio) -1 0 1 2at 242.983 kb on - strandat 243.027 kb on - strandat 243.088 kb on + strandat 243.096 kb on - strandat 243.096 kb on - strandat 243.110 kb on + strandat 243.177 kb on + strand, within CSW01_15090at 243.177 kb on + strand, within CSW01_15090at 243.185 kb on - strand, within CSW01_15090at 243.219 kb on + strand, within CSW01_15090at 243.279 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.334 kb on - strand, within CSW01_15090at 243.334 kb on - strand, within CSW01_15090at 243.348 kb on - strand, within CSW01_15090at 243.389 kb on - strand, within CSW01_15090at 243.467 kb on + strand, within CSW01_15090at 243.555 kb on + strand, within CSW01_15090at 243.577 kb on + strand, within CSW01_15090at 243.577 kb on + strand, within CSW01_15090at 243.633 kb on + strand, within CSW01_15090at 243.641 kb on - strand, within CSW01_15090at 243.672 kb on + strand, within CSW01_15090at 243.672 kb on + strand, within CSW01_15090at 243.680 kb on - strand, within CSW01_15090at 243.706 kb on - strand, within CSW01_15090at 243.706 kb on - strand, within CSW01_15090at 243.708 kb on - strand, within CSW01_15090at 243.799 kb on - strand, within CSW01_15090at 243.842 kb on + strandat 243.842 kb on - strandat 243.908 kb on - strandat 243.951 kb on - strandat 243.953 kb on + strandat 244.033 kb on + strandat 244.055 kb on + strandat 244.157 kb on + strandat 244.243 kb on - strandat 244.355 kb on - strand, within CSW01_15095at 244.355 kb on - strand, within CSW01_15095at 244.445 kb on + strand, within CSW01_15095at 244.453 kb on - strand, within CSW01_15095at 244.455 kb on + strand, within CSW01_15095at 244.494 kb on + strand, within CSW01_15095at 244.509 kb on - strand, within CSW01_15095at 244.602 kb on - strand, within CSW01_15095at 244.602 kb on - strand, within CSW01_15095at 244.663 kb on + strand, within CSW01_15095at 244.671 kb on - strand, within CSW01_15095at 244.671 kb on - strand, within CSW01_15095at 244.706 kb on - strand, within CSW01_15095at 244.772 kb on + strand, within CSW01_15095at 244.795 kb on - strand, within CSW01_15095at 244.795 kb on - strand, within CSW01_15095at 244.795 kb on - strand, within CSW01_15095at 244.805 kb on - strand, within CSW01_15095at 244.905 kb on + strand, within CSW01_15095at 244.911 kb on + strand, within CSW01_15095at 244.919 kb on - strand, within CSW01_15095at 244.956 kb on - strand, within CSW01_15095at 245.000 kb on + strand, within CSW01_15095at 245.091 kb on - strand, within CSW01_15095at 245.141 kb on - strand, within CSW01_15095at 245.141 kb on - strand, within CSW01_15095at 245.141 kb on - strand, within CSW01_15095at 245.144 kb on + strand, within CSW01_15095at 245.176 kb on - strand, within CSW01_15095at 245.197 kb on - strand, within CSW01_15095at 245.263 kb on + strand, within CSW01_15095at 245.268 kb on + strand, within CSW01_15095at 245.271 kb on - strand, within CSW01_15095at 245.294 kb on - strand, within CSW01_15095at 245.314 kb on + strand, within CSW01_15095at 245.333 kb on - strand, within CSW01_15095at 245.433 kb on - strand, within CSW01_15095at 245.433 kb on - strand, within CSW01_15095at 245.442 kb on - strand, within CSW01_15095at 245.502 kb on - strand, within CSW01_15095at 245.555 kb on + strand, within CSW01_15095at 245.557 kb on - strand, within CSW01_15095at 245.602 kb on - strand, within CSW01_15095at 245.614 kb on + strand, within CSW01_15095at 245.615 kb on - strand, within CSW01_15095at 245.669 kb on + strand, within CSW01_15095at 245.695 kb on - strand, within CSW01_15095at 245.696 kb on - strand, within CSW01_15095at 245.703 kb on - strand, within CSW01_15095at 245.715 kb on - strand, within CSW01_15095at 245.735 kb on - strand, within CSW01_15095at 245.778 kb on + strand, within CSW01_15095at 245.870 kb on + strand, within CSW01_15095at 245.878 kb on - strand, within CSW01_15095at 246.043 kb on - strand, within CSW01_15095at 246.086 kb on - strand, within CSW01_15095at 246.091 kb on - strand, within CSW01_15095at 246.091 kb on - strand, within CSW01_15095at 246.128 kb on - strand, within CSW01_15095at 246.156 kb on + strand, within CSW01_15095at 246.184 kb on + strand, within CSW01_15095at 246.192 kb on - strand, within CSW01_15095at 246.192 kb on - strand, within CSW01_15095at 246.252 kb on + strand, within CSW01_15095at 246.252 kb on + strand, within CSW01_15095at 246.253 kb on + strand, within CSW01_15095at 246.253 kb on + strand, within CSW01_15095at 246.260 kb on - strand, within CSW01_15095at 246.260 kb on - strand, within CSW01_15095at 246.260 kb on - strand, within CSW01_15095at 246.647 kb on + strandat 246.648 kb on + strandat 246.656 kb on - strandat 246.656 kb on - strandat 246.807 kb on - strandat 246.844 kb on - strandat 246.872 kb on - strand, within CSW01_15100at 246.872 kb on - strand, within CSW01_15100at 246.882 kb on + strand, within CSW01_15100at 246.883 kb on - strand, within CSW01_15100at 246.929 kb on + strand, within CSW01_15100at 246.970 kb on - strand, within CSW01_15100at 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.464 kb on + strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.472 kb on - strandat 247.489 kb on + strandat 247.489 kb on + strandat 247.489 kb on + strandat 247.490 kb on + strandat 247.492 kb on - strandat 247.498 kb on - strandat 247.498 kb on - strandat 247.502 kb on - strandat 247.529 kb on - strandat 247.574 kb on + strandat 247.582 kb on - strandat 247.582 kb on - strandat 247.582 kb on - strandat 247.622 kb on + strandat 247.622 kb on + strandat 247.622 kb on + strandat 247.622 kb on + strandat 247.630 kb on - strandat 247.630 kb on - strandat 247.630 kb on - strandat 247.630 kb on - strandat 247.724 kb on + strandat 247.724 kb on + strandat 247.732 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
remove
242,983 - -0.4
243,027 - +0.5
243,088 + +0.5
243,096 - -0.7
243,096 - -0.2
243,110 + +0.3
243,177 + CSW01_15090 0.15 +0.9
243,177 + CSW01_15090 0.15 -0.4
243,185 - CSW01_15090 0.16 +0.6
243,219 + CSW01_15090 0.20 -0.6
243,279 + CSW01_15090 0.27 +2.2
243,326 + CSW01_15090 0.32 +0.8
243,326 + CSW01_15090 0.32 +0.2
243,326 + CSW01_15090 0.32 +0.4
243,326 + CSW01_15090 0.32 +1.2
243,326 + CSW01_15090 0.32 -0.0
243,326 + CSW01_15090 0.32 -0.1
243,334 - CSW01_15090 0.33 +0.3
243,334 - CSW01_15090 0.33 +0.1
243,348 - CSW01_15090 0.35 +1.5
243,389 - CSW01_15090 0.40 +0.1
243,467 + CSW01_15090 0.49 +0.7
243,555 + CSW01_15090 0.59 +0.3
243,577 + CSW01_15090 0.62 -0.3
243,577 + CSW01_15090 0.62 +0.3
243,633 + CSW01_15090 0.68 +0.1
243,641 - CSW01_15090 0.69 +0.8
243,672 + CSW01_15090 0.73 +0.1
243,672 + CSW01_15090 0.73 +0.1
243,680 - CSW01_15090 0.74 +1.1
243,706 - CSW01_15090 0.77 -0.6
243,706 - CSW01_15090 0.77 -1.4
243,708 - CSW01_15090 0.77 +0.4
243,799 - CSW01_15090 0.87 +0.5
243,842 + +1.1
243,842 - +0.2
243,908 - -1.3
243,951 - +0.9
243,953 + +0.2
244,033 + +0.4
244,055 + +0.6
244,157 + -0.9
244,243 - +0.3
244,355 - CSW01_15095 0.14 +0.2
244,355 - CSW01_15095 0.14 -1.5
244,445 + CSW01_15095 0.17 +0.1
244,453 - CSW01_15095 0.17 +0.2
244,455 + CSW01_15095 0.17 +0.6
244,494 + CSW01_15095 0.19 -0.7
244,509 - CSW01_15095 0.19 -1.3
244,602 - CSW01_15095 0.23 -0.5
244,602 - CSW01_15095 0.23 -0.0
244,663 + CSW01_15095 0.25 +1.2
244,671 - CSW01_15095 0.25 +0.2
244,671 - CSW01_15095 0.25 +0.3
244,706 - CSW01_15095 0.26 +0.1
244,772 + CSW01_15095 0.29 +0.2
244,795 - CSW01_15095 0.30 +0.3
244,795 - CSW01_15095 0.30 +0.3
244,795 - CSW01_15095 0.30 -0.1
244,805 - CSW01_15095 0.30 +0.7
244,905 + CSW01_15095 0.34 +0.3
244,911 + CSW01_15095 0.34 +1.9
244,919 - CSW01_15095 0.34 -0.3
244,956 - CSW01_15095 0.35 -0.3
245,000 + CSW01_15095 0.37 +0.7
245,091 - CSW01_15095 0.40 -1.1
245,141 - CSW01_15095 0.42 +0.9
245,141 - CSW01_15095 0.42 +0.8
245,141 - CSW01_15095 0.42 +1.3
245,144 + CSW01_15095 0.42 +1.7
245,176 - CSW01_15095 0.43 +1.1
245,197 - CSW01_15095 0.44 +1.2
245,263 + CSW01_15095 0.46 +0.6
245,268 + CSW01_15095 0.47 -0.0
245,271 - CSW01_15095 0.47 +0.1
245,294 - CSW01_15095 0.48 -0.1
245,314 + CSW01_15095 0.48 +0.4
245,333 - CSW01_15095 0.49 +0.4
245,433 - CSW01_15095 0.53 +0.2
245,433 - CSW01_15095 0.53 +1.3
245,442 - CSW01_15095 0.53 +0.1
245,502 - CSW01_15095 0.55 +0.2
245,555 + CSW01_15095 0.57 +0.1
245,557 - CSW01_15095 0.57 +0.6
245,602 - CSW01_15095 0.59 +0.7
245,614 + CSW01_15095 0.59 +1.0
245,615 - CSW01_15095 0.59 +0.5
245,669 + CSW01_15095 0.61 +1.0
245,695 - CSW01_15095 0.62 -0.4
245,696 - CSW01_15095 0.62 +1.4
245,703 - CSW01_15095 0.62 -0.1
245,715 - CSW01_15095 0.63 -0.5
245,735 - CSW01_15095 0.64 +0.1
245,778 + CSW01_15095 0.65 +0.7
245,870 + CSW01_15095 0.69 +0.3
245,878 - CSW01_15095 0.69 +0.4
246,043 - CSW01_15095 0.75 +0.3
246,086 - CSW01_15095 0.76 +1.4
246,091 - CSW01_15095 0.77 +0.7
246,091 - CSW01_15095 0.77 +0.2
246,128 - CSW01_15095 0.78 +0.3
246,156 + CSW01_15095 0.79 -0.7
246,184 + CSW01_15095 0.80 +0.1
246,192 - CSW01_15095 0.80 +0.6
246,192 - CSW01_15095 0.80 -0.5
246,252 + CSW01_15095 0.82 +0.8
246,252 + CSW01_15095 0.82 -0.2
246,253 + CSW01_15095 0.82 +0.1
246,253 + CSW01_15095 0.82 +0.2
246,260 - CSW01_15095 0.83 -0.2
246,260 - CSW01_15095 0.83 -0.9
246,260 - CSW01_15095 0.83 -0.2
246,647 + +1.1
246,648 + -0.4
246,656 - -0.1
246,656 - +0.6
246,807 - +0.1
246,844 - +0.5
246,872 - CSW01_15100 0.16 +0.2
246,872 - CSW01_15100 0.16 +0.5
246,882 + CSW01_15100 0.20 +0.3
246,883 - CSW01_15100 0.20 +0.4
246,929 + CSW01_15100 0.35 +0.8
246,970 - CSW01_15100 0.48 +0.5
247,464 + -0.2
247,464 + -0.1
247,464 + +0.1
247,464 + -0.5
247,464 + -0.2
247,464 + +0.1
247,464 + +0.9
247,464 + -0.5
247,464 + +0.9
247,464 + -0.2
247,472 - -0.7
247,472 - -0.1
247,472 - +0.1
247,472 - +0.7
247,472 - +0.6
247,472 - +1.8
247,472 - -0.1
247,472 - +0.8
247,472 - +0.4
247,472 - +0.0
247,489 + +0.4
247,489 + +1.5
247,489 + +2.4
247,490 + -1.1
247,492 - -0.7
247,498 - +0.7
247,498 - +0.4
247,502 - -0.1
247,529 - +0.8
247,574 + -0.2
247,582 - +0.4
247,582 - +0.6
247,582 - +0.9
247,622 + +1.0
247,622 + +1.1
247,622 + +0.1
247,622 + +0.1
247,630 - +1.1
247,630 - -0.3
247,630 - -0.6
247,630 - -0.7
247,724 + +0.2
247,724 + -0.6
247,732 - +0.4

Or see this region's nucleotide sequence