Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14840

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14835 and CSW01_14840 are separated by 160 nucleotidesCSW01_14840 and CSW01_14845 overlap by 7 nucleotides CSW01_14835: CSW01_14835 - SIMPL domain-containing protein, at 184,756 to 185,472 _14835 CSW01_14840: CSW01_14840 - aerotolerance protein BatD, at 185,633 to 187,285 _14840 CSW01_14845: CSW01_14845 - VWA domain-containing protein, at 187,279 to 189,219 _14845 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -1 0 1at 184.642 kb on + strandat 184.655 kb on - strandat 184.727 kb on + strandat 184.781 kb on - strandat 184.958 kb on + strand, within CSW01_14835at 185.297 kb on + strand, within CSW01_14835at 185.300 kb on - strand, within CSW01_14835at 185.435 kb on - strandat 185.475 kb on - strandat 185.524 kb on - strandat 185.524 kb on - strandat 185.524 kb on - strandat 185.739 kb on - strandat 185.831 kb on + strand, within CSW01_14840at 185.913 kb on - strand, within CSW01_14840at 185.994 kb on + strand, within CSW01_14840at 185.994 kb on + strand, within CSW01_14840at 185.996 kb on - strand, within CSW01_14840at 186.002 kb on - strand, within CSW01_14840at 186.066 kb on + strand, within CSW01_14840at 186.074 kb on - strand, within CSW01_14840at 186.074 kb on - strand, within CSW01_14840at 186.094 kb on - strand, within CSW01_14840at 186.094 kb on - strand, within CSW01_14840at 186.146 kb on + strand, within CSW01_14840at 186.196 kb on - strand, within CSW01_14840at 186.218 kb on - strand, within CSW01_14840at 186.224 kb on + strand, within CSW01_14840at 186.258 kb on + strand, within CSW01_14840at 186.258 kb on + strand, within CSW01_14840at 186.258 kb on + strand, within CSW01_14840at 186.459 kb on + strand, within CSW01_14840at 186.489 kb on - strand, within CSW01_14840at 186.573 kb on + strand, within CSW01_14840at 186.575 kb on + strand, within CSW01_14840at 186.583 kb on - strand, within CSW01_14840at 186.600 kb on + strand, within CSW01_14840at 186.620 kb on - strand, within CSW01_14840at 186.648 kb on - strand, within CSW01_14840at 186.659 kb on + strand, within CSW01_14840at 186.810 kb on + strand, within CSW01_14840at 186.849 kb on - strand, within CSW01_14840at 186.868 kb on - strand, within CSW01_14840at 186.891 kb on + strand, within CSW01_14840at 186.904 kb on - strand, within CSW01_14840at 186.968 kb on + strand, within CSW01_14840at 187.001 kb on + strand, within CSW01_14840at 187.235 kb on - strandat 187.265 kb on - strandat 187.318 kb on - strandat 187.355 kb on - strandat 187.378 kb on - strandat 187.460 kb on + strandat 187.540 kb on + strand, within CSW01_14845at 187.548 kb on - strand, within CSW01_14845at 187.686 kb on - strand, within CSW01_14845at 187.686 kb on - strand, within CSW01_14845at 187.722 kb on - strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.895 kb on + strand, within CSW01_14845at 187.903 kb on - strand, within CSW01_14845at 187.903 kb on - strand, within CSW01_14845at 187.905 kb on + strand, within CSW01_14845at 188.012 kb on + strand, within CSW01_14845at 188.012 kb on + strand, within CSW01_14845at 188.020 kb on - strand, within CSW01_14845at 188.020 kb on - strand, within CSW01_14845at 188.020 kb on - strand, within CSW01_14845at 188.030 kb on - strand, within CSW01_14845at 188.158 kb on + strand, within CSW01_14845at 188.200 kb on + strand, within CSW01_14845at 188.219 kb on + strand, within CSW01_14845

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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184,642 + +0.1
184,655 - -0.3
184,727 + +0.9
184,781 - +0.0
184,958 + CSW01_14835 0.28 +0.3
185,297 + CSW01_14835 0.75 +0.8
185,300 - CSW01_14835 0.76 +0.1
185,435 - +0.3
185,475 - -0.3
185,524 - -0.2
185,524 - -0.1
185,524 - +0.3
185,739 - -0.2
185,831 + CSW01_14840 0.12 +0.1
185,913 - CSW01_14840 0.17 -0.4
185,994 + CSW01_14840 0.22 -0.4
185,994 + CSW01_14840 0.22 -0.1
185,996 - CSW01_14840 0.22 -1.5
186,002 - CSW01_14840 0.22 +0.6
186,066 + CSW01_14840 0.26 -0.7
186,074 - CSW01_14840 0.27 +0.3
186,074 - CSW01_14840 0.27 +0.6
186,094 - CSW01_14840 0.28 -0.7
186,094 - CSW01_14840 0.28 -0.3
186,146 + CSW01_14840 0.31 -0.9
186,196 - CSW01_14840 0.34 -0.2
186,218 - CSW01_14840 0.35 +0.5
186,224 + CSW01_14840 0.36 -0.2
186,258 + CSW01_14840 0.38 +0.5
186,258 + CSW01_14840 0.38 -0.5
186,258 + CSW01_14840 0.38 -0.5
186,459 + CSW01_14840 0.50 +1.0
186,489 - CSW01_14840 0.52 +0.5
186,573 + CSW01_14840 0.57 -0.7
186,575 + CSW01_14840 0.57 +0.4
186,583 - CSW01_14840 0.57 -0.6
186,600 + CSW01_14840 0.58 +0.2
186,620 - CSW01_14840 0.60 -0.3
186,648 - CSW01_14840 0.61 -0.7
186,659 + CSW01_14840 0.62 -0.1
186,810 + CSW01_14840 0.71 +0.4
186,849 - CSW01_14840 0.74 +0.4
186,868 - CSW01_14840 0.75 +0.3
186,891 + CSW01_14840 0.76 -0.1
186,904 - CSW01_14840 0.77 +1.7
186,968 + CSW01_14840 0.81 +0.3
187,001 + CSW01_14840 0.83 +0.8
187,235 - +0.0
187,265 - +0.0
187,318 - -0.2
187,355 - +0.4
187,378 - +0.2
187,460 + -0.1
187,540 + CSW01_14845 0.13 +0.7
187,548 - CSW01_14845 0.14 +0.5
187,686 - CSW01_14845 0.21 -0.0
187,686 - CSW01_14845 0.21 -0.1
187,722 - CSW01_14845 0.23 +0.5
187,895 + CSW01_14845 0.32 +0.3
187,895 + CSW01_14845 0.32 -0.8
187,895 + CSW01_14845 0.32 +0.7
187,895 + CSW01_14845 0.32 +0.0
187,903 - CSW01_14845 0.32 -0.1
187,903 - CSW01_14845 0.32 -0.0
187,905 + CSW01_14845 0.32 +0.5
188,012 + CSW01_14845 0.38 -1.1
188,012 + CSW01_14845 0.38 -0.0
188,020 - CSW01_14845 0.38 +0.9
188,020 - CSW01_14845 0.38 +0.5
188,020 - CSW01_14845 0.38 +0.9
188,030 - CSW01_14845 0.39 -0.0
188,158 + CSW01_14845 0.45 +0.3
188,200 + CSW01_14845 0.47 +0.5
188,219 + CSW01_14845 0.48 -0.4

Or see this region's nucleotide sequence