Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14795

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14785 and CSW01_14790 are separated by 146 nucleotidesCSW01_14790 and CSW01_14795 are separated by 71 nucleotidesCSW01_14795 and CSW01_14800 are separated by 195 nucleotides CSW01_14785: CSW01_14785 - proton-conducting membrane transporter, at 172,959 to 175,634 _14785 CSW01_14790: CSW01_14790 - hypothetical protein, at 175,781 to 175,981 _14790 CSW01_14795: CSW01_14795 - universal stress protein, at 176,053 to 176,994 _14795 CSW01_14800: CSW01_14800 - transposase, at 177,190 to 178,425 _14800 Position (kb) 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 175.059 kb on - strand, within CSW01_14785at 175.114 kb on + strand, within CSW01_14785at 175.170 kb on - strand, within CSW01_14785at 175.247 kb on + strand, within CSW01_14785at 175.254 kb on - strand, within CSW01_14785at 175.257 kb on + strand, within CSW01_14785at 175.309 kb on - strand, within CSW01_14785at 175.331 kb on + strand, within CSW01_14785at 175.339 kb on - strand, within CSW01_14785at 175.339 kb on - strand, within CSW01_14785at 175.542 kb on + strandat 175.579 kb on + strandat 175.614 kb on - strandat 175.733 kb on - strandat 175.803 kb on + strand, within CSW01_14790at 175.811 kb on - strand, within CSW01_14790at 175.811 kb on - strand, within CSW01_14790at 175.816 kb on + strand, within CSW01_14790at 175.869 kb on + strand, within CSW01_14790at 175.901 kb on - strand, within CSW01_14790at 175.919 kb on + strand, within CSW01_14790at 175.919 kb on + strand, within CSW01_14790at 175.920 kb on + strand, within CSW01_14790at 175.920 kb on + strand, within CSW01_14790at 175.927 kb on - strand, within CSW01_14790at 175.927 kb on - strand, within CSW01_14790at 175.936 kb on - strand, within CSW01_14790at 175.962 kb on + strandat 176.001 kb on + strandat 176.029 kb on - strandat 176.088 kb on + strandat 176.254 kb on + strand, within CSW01_14795at 176.270 kb on - strand, within CSW01_14795at 176.311 kb on - strand, within CSW01_14795at 176.438 kb on + strand, within CSW01_14795at 176.479 kb on + strand, within CSW01_14795at 176.614 kb on + strand, within CSW01_14795at 176.617 kb on - strand, within CSW01_14795at 176.622 kb on - strand, within CSW01_14795at 176.622 kb on - strand, within CSW01_14795at 176.630 kb on - strand, within CSW01_14795at 176.637 kb on + strand, within CSW01_14795at 176.673 kb on + strand, within CSW01_14795at 176.783 kb on - strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.820 kb on - strand, within CSW01_14795at 176.821 kb on + strand, within CSW01_14795at 176.835 kb on + strand, within CSW01_14795at 176.843 kb on - strand, within CSW01_14795at 176.900 kb on + strandat 176.956 kb on + strandat 176.964 kb on - strandat 177.187 kb on + strandat 177.252 kb on + strandat 177.254 kb on + strandat 177.259 kb on + strandat 177.260 kb on - strandat 177.304 kb on + strandat 177.307 kb on - strandat 177.312 kb on - strandat 177.354 kb on + strand, within CSW01_14800at 177.356 kb on - strand, within CSW01_14800at 177.366 kb on + strand, within CSW01_14800at 177.372 kb on - strand, within CSW01_14800at 177.389 kb on + strand, within CSW01_14800at 177.397 kb on - strand, within CSW01_14800at 177.482 kb on + strand, within CSW01_14800at 177.488 kb on - strand, within CSW01_14800at 177.529 kb on + strand, within CSW01_14800at 177.529 kb on + strand, within CSW01_14800at 177.577 kb on + strand, within CSW01_14800at 177.868 kb on + strand, within CSW01_14800at 177.900 kb on + strand, within CSW01_14800at 177.949 kb on + strand, within CSW01_14800at 177.993 kb on - strand, within CSW01_14800

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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175,059 - CSW01_14785 0.78 +0.8
175,114 + CSW01_14785 0.81 +0.4
175,170 - CSW01_14785 0.83 +0.2
175,247 + CSW01_14785 0.86 -0.4
175,254 - CSW01_14785 0.86 +0.3
175,257 + CSW01_14785 0.86 -0.4
175,309 - CSW01_14785 0.88 +0.1
175,331 + CSW01_14785 0.89 -0.1
175,339 - CSW01_14785 0.89 -0.3
175,339 - CSW01_14785 0.89 -1.6
175,542 + +0.2
175,579 + +2.4
175,614 - -0.1
175,733 - -0.3
175,803 + CSW01_14790 0.11 +0.1
175,811 - CSW01_14790 0.15 -0.0
175,811 - CSW01_14790 0.15 +1.2
175,816 + CSW01_14790 0.17 +0.5
175,869 + CSW01_14790 0.44 +0.5
175,901 - CSW01_14790 0.60 -0.5
175,919 + CSW01_14790 0.69 +0.6
175,919 + CSW01_14790 0.69 -1.1
175,920 + CSW01_14790 0.69 -1.3
175,920 + CSW01_14790 0.69 +1.1
175,927 - CSW01_14790 0.73 -1.2
175,927 - CSW01_14790 0.73 +0.6
175,936 - CSW01_14790 0.77 +0.8
175,962 + +0.6
176,001 + +0.5
176,029 - +0.4
176,088 + -0.2
176,254 + CSW01_14795 0.21 +0.3
176,270 - CSW01_14795 0.23 -0.5
176,311 - CSW01_14795 0.27 -0.1
176,438 + CSW01_14795 0.41 +1.1
176,479 + CSW01_14795 0.45 -0.8
176,614 + CSW01_14795 0.60 +0.5
176,617 - CSW01_14795 0.60 +1.0
176,622 - CSW01_14795 0.60 -2.0
176,622 - CSW01_14795 0.60 -1.2
176,630 - CSW01_14795 0.61 +0.9
176,637 + CSW01_14795 0.62 +1.4
176,673 + CSW01_14795 0.66 -0.9
176,783 - CSW01_14795 0.77 -0.2
176,790 + CSW01_14795 0.78 +0.1
176,790 + CSW01_14795 0.78 +0.9
176,790 + CSW01_14795 0.78 +0.3
176,790 + CSW01_14795 0.78 +2.4
176,790 + CSW01_14795 0.78 -0.2
176,790 + CSW01_14795 0.78 +0.4
176,790 + CSW01_14795 0.78 -1.2
176,790 + CSW01_14795 0.78 -0.5
176,790 + CSW01_14795 0.78 +0.5
176,798 - CSW01_14795 0.79 +1.0
176,798 - CSW01_14795 0.79 +0.6
176,798 - CSW01_14795 0.79 +0.5
176,798 - CSW01_14795 0.79 -0.8
176,798 - CSW01_14795 0.79 +0.4
176,798 - CSW01_14795 0.79 +0.6
176,820 - CSW01_14795 0.81 +0.7
176,821 + CSW01_14795 0.82 +0.5
176,835 + CSW01_14795 0.83 -0.1
176,843 - CSW01_14795 0.84 +0.5
176,900 + -1.2
176,956 + +0.1
176,964 - +0.1
177,187 + -0.0
177,252 + +1.0
177,254 + +1.2
177,259 + +0.7
177,260 - +1.1
177,304 + +0.9
177,307 - +1.3
177,312 - +0.2
177,354 + CSW01_14800 0.13 +1.8
177,356 - CSW01_14800 0.13 +0.6
177,366 + CSW01_14800 0.14 +0.9
177,372 - CSW01_14800 0.15 -1.1
177,389 + CSW01_14800 0.16 -0.4
177,397 - CSW01_14800 0.17 +0.2
177,482 + CSW01_14800 0.24 +0.8
177,488 - CSW01_14800 0.24 +2.3
177,529 + CSW01_14800 0.27 -0.6
177,529 + CSW01_14800 0.27 +0.0
177,577 + CSW01_14800 0.31 -0.2
177,868 + CSW01_14800 0.55 -0.0
177,900 + CSW01_14800 0.57 +0.5
177,949 + CSW01_14800 0.61 +0.1
177,993 - CSW01_14800 0.65 +0.6

Or see this region's nucleotide sequence