Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09065

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_18HR_ZN19A
1,947,482	-				+0.9
1,947,595	-				+0.2
1,947,596	+				+0.8
1,947,596	+				+0.4
1,947,596	+				-1.5
1,947,604	-				-0.2
1,947,618	+				-0.6
1,947,619	-				-0.3
1,947,689	+		CSW01_09055	0.29	+0.1
1,947,716	+		CSW01_09055	0.39	-0.2
1,947,716	+		CSW01_09055	0.39	+0.5
1,947,716	+		CSW01_09055	0.39	+0.0
1,947,851	+				+0.4
1,947,859	-				+0.4
1,947,949	-				-0.3
1,947,981	+		CSW01_09060	0.12	+1.1
1,948,069	+		CSW01_09060	0.32	-0.7
1,948,078	+		CSW01_09060	0.34	+0.2
1,948,124	+		CSW01_09060	0.44	-0.8
1,948,124	+		CSW01_09060	0.44	+0.8
1,948,132	-		CSW01_09060	0.46	-1.0
1,948,132	-		CSW01_09060	0.46	+2.2
1,948,132	-		CSW01_09060	0.46	+0.5
1,948,154	-		CSW01_09060	0.51	+0.8
1,948,161	+		CSW01_09060	0.52	-0.3
1,948,250	-		CSW01_09060	0.72	+0.6
1,948,298	+		CSW01_09060	0.83	+0.4
1,948,416	-				+0.0
1,948,420	+				+0.0
1,948,476	-				+0.4
1,948,599	-		CSW01_09065	0.12	-0.3
1,948,621	-		CSW01_09065	0.14	-0.3
1,948,698	+		CSW01_09065	0.22	-0.2
1,948,716	-		CSW01_09065	0.24	+0.4
1,948,716	-		CSW01_09065	0.24	+0.0
1,948,716	-		CSW01_09065	0.24	-0.8
1,948,748	+		CSW01_09065	0.27	+0.0
1,948,748	+		CSW01_09065	0.27	-0.3
1,948,748	+		CSW01_09065	0.27	+0.4
1,948,748	+		CSW01_09065	0.27	-0.3
1,948,748	+		CSW01_09065	0.27	-0.5
1,948,756	-		CSW01_09065	0.28	+0.9
1,948,872	-		CSW01_09065	0.40	+0.8
1,948,902	-		CSW01_09065	0.43	-0.5
1,948,966	-		CSW01_09065	0.49	+0.4
1,949,037	+		CSW01_09065	0.56	-0.1
1,949,045	-		CSW01_09065	0.57	+0.4
1,949,045	-		CSW01_09065	0.57	+0.2
1,949,064	+		CSW01_09065	0.59	+0.2
1,949,086	-		CSW01_09065	0.61	+0.7
1,949,131	+		CSW01_09065	0.66	-0.3
1,949,138	+		CSW01_09065	0.67	-0.7
1,949,138	-		CSW01_09065	0.67	+0.8
1,949,138	-		CSW01_09065	0.67	+0.8
1,949,179	-		CSW01_09065	0.71	+2.7
1,949,181	+		CSW01_09065	0.71	-1.5
1,949,181	+		CSW01_09065	0.71	+0.2
1,949,189	-		CSW01_09065	0.72	-0.7
1,949,227	-		CSW01_09065	0.76	+0.2
1,949,251	-		CSW01_09065	0.78	-0.1
1,949,303	+		CSW01_09065	0.83	-0.0
1,949,303	+		CSW01_09065	0.83	+0.0
1,949,303	+		CSW01_09065	0.83	+0.1
1,949,303	+		CSW01_09065	0.83	-0.8
1,949,303	+		CSW01_09065	0.83	-0.6
1,949,303	+		CSW01_09065	0.83	+0.4
1,949,303	+		CSW01_09065	0.83	+0.3
1,949,303	+		CSW01_09065	0.83	-0.1
1,949,309	+		CSW01_09065	0.84	+0.4
1,949,407	+				-0.6
1,949,407	+				+0.4
1,949,407	+				+1.5
1,949,407	+				-0.1
1,949,407	+				-0.6
1,949,407	+				+0.2
1,949,407	+				-0.8
1,949,407	+				+0.1
1,949,407	+				-0.2
1,949,407	+				-0.2
1,949,407	+				-0.4
1,949,407	+				-0.3
1,949,408	-				+0.1
1,949,415	-				+0.2
1,949,415	-				-0.1
1,949,415	-				+1.2
1,949,415	-				-0.8
1,949,422	-				+0.2
1,949,599	-		CSW01_09070	0.15	-0.5
1,949,646	+		CSW01_09070	0.23	+0.1
1,949,656	+		CSW01_09070	0.24	-0.2
1,949,661	+		CSW01_09070	0.25	+0.7
1,949,661	+		CSW01_09070	0.25	+0.0
1,949,671	-		CSW01_09070	0.27	+0.4
1,949,688	-		CSW01_09070	0.29	-1.1
1,949,688	-		CSW01_09070	0.29	+0.2
1,949,702	-		CSW01_09070	0.31	+1.7
1,949,709	+		CSW01_09070	0.32	+0.3
1,949,717	-		CSW01_09070	0.34	+1.3
1,949,733	+		CSW01_09070	0.36	-0.1
1,949,809	+		CSW01_09070	0.48	-0.1
1,949,817	-		CSW01_09070	0.49	-0.7
1,949,822	-		CSW01_09070	0.50	+0.0
1,949,822	-		CSW01_09070	0.50	-0.0
1,949,827	+		CSW01_09070	0.51	+0.3
1,949,835	-		CSW01_09070	0.52	-0.5
1,949,862	+		CSW01_09070	0.56	-0.3
1,949,870	-		CSW01_09070	0.58	-0.3
1,949,876	-		CSW01_09070	0.59	+0.7
1,949,943	-		CSW01_09070	0.69	-0.6
1,949,945	+		CSW01_09070	0.69	-1.1
1,949,953	-		CSW01_09070	0.71	+0.4
1,949,967	+		CSW01_09070	0.73	-1.3
1,949,992	+		CSW01_09070	0.77	-0.8
1,949,998	-		CSW01_09070	0.78	-0.3
1,950,148	+				+0.2
1,950,154	+				-2.5
1,950,156	-				+0.3
1,950,161	-				-0.6
1,950,161	-				+0.4
1,950,161	-				-0.3
1,950,189	+				-0.5
1,950,210	-				+1.2
1,950,237	+				-2.0
1,950,245	-				+0.7
1,950,249	+				+0.1
1,950,269	+				+1.4
1,950,274	+				-1.4
1,950,274	+				+0.7
1,950,274	+				-0.2
1,950,274	-				+0.7
1,950,282	-				+0.6
1,950,282	-				+0.5
1,950,282	-				-0.3
1,950,282	-				+1.2
1,950,282	-				-0.3
1,950,282	-				-0.2
1,950,300	-				-0.8
1,950,302	-				+1.2
1,950,304	-				-1.2
1,950,306	+				-0.0
1,950,314	-				+0.0
1,950,317	+				-1.5
1,950,323	+				+0.7
1,950,329	+				-1.0
1,950,329	+				+0.6
1,950,329	+				+0.5
1,950,329	+				-0.2
1,950,329	+				-0.5
1,950,329	+				-0.6
1,950,329	+				+0.4
1,950,329	+				-0.2
1,950,329	+				+0.5
1,950,329	+				-0.8
1,950,329	+				+0.4
1,950,329	+				+0.5
1,950,329	+				-0.4
1,950,329	+				+0.2
1,950,329	+				-1.0
1,950,329	+				+1.7
1,950,329	+				-0.1
1,950,329	+				+0.2
1,950,329	+				-0.1
1,950,329	+				+0.0
1,950,329	+				-0.7
1,950,329	+				-0.7
1,950,329	+				+1.3
1,950,329	+				-1.1
1,950,329	+				-0.6
1,950,329	+				+0.7
1,950,329	+				+1.9
1,950,329	+				-0.3
1,950,331	-				+0.5
1,950,335	-				+0.8
1,950,337	-				-0.3
1,950,337	-				-0.3
1,950,337	-				-0.0
1,950,337	-				-0.5
1,950,337	-				+0.3
1,950,337	-				+0.2
1,950,337	-				-0.1
1,950,337	-				-0.6
1,950,337	-				+0.3
1,950,337	-				+0.3
1,950,337	-				-0.6
1,950,337	-				+0.2
1,950,337	-				+0.0
1,950,337	-				-0.2
1,950,337	-				+1.5
1,950,337	-				+0.0
1,950,337	-				-0.0
1,950,337	-				-1.0
1,950,337	-				+0.0
1,950,337	-				-0.7
1,950,337	-				-0.2
1,950,337	-				-0.7
1,950,337	-				+0.2
1,950,337	-				-0.7
1,950,337	-				+0.2
1,950,339	+				-0.0
1,950,339	+				+1.2
1,950,339	+				+1.0
1,950,339	+				+0.1
1,950,339	+				-0.1
1,950,339	+				+0.4
1,950,339	+				-0.1
1,950,339	+				-0.3
1,950,339	+				-1.0
1,950,339	+				-1.7
1,950,339	+				-0.2
1,950,339	+				+1.7
1,950,339	+				+0.0
1,950,339	+				-0.9
1,950,339	+				-0.5
1,950,339	+				-0.5
1,950,339	+				+0.6
1,950,339	+				+0.0
1,950,339	+				-0.6
1,950,339	+				+0.0
1,950,339	+				+0.5
1,950,339	+				+1.0
1,950,339	+				-0.3
1,950,339	+				+0.9
1,950,339	+				-0.5
1,950,339	+				+0.2
1,950,339	+				-0.6
1,950,339	+				-0.0
1,950,339	+				-0.2
1,950,339	+				+0.0
1,950,339	+				+0.5
1,950,339	+				+0.6
1,950,339	+				-0.0
1,950,339	-				+0.3
1,950,347	-				-0.9
1,950,347	-				+0.5
1,950,347	-				-0.4
1,950,347	-				+0.3
1,950,347	-				-1.2
1,950,347	-				+0.3
1,950,347	-				-0.7
1,950,347	-				-0.0
1,950,347	-				+0.2
1,950,347	-				-0.8
1,950,347	-				+1.0
1,950,347	-				-1.1
1,950,347	-				-0.8
1,950,347	-				+0.2
1,950,347	-				-0.1
1,950,347	-				-0.1
1,950,347	-				+0.2
1,950,347	-				+0.6
1,950,347	-				-0.7
1,950,347	-				+0.6
1,950,347	-				-0.3
1,950,347	-				-0.7
1,950,347	-				-0.7
1,950,347	-				-0.1
1,950,347	-				-0.4
1,950,375	+				-0.3
1,950,383	-				-1.2
1,950,383	-				-1.1
1,950,408	+				-0.2