Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08890

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_18HR_ZN19A
1,919,699	-		CSW01_08885	0.75	+0.1
1,919,720	+		CSW01_08885	0.75	-0.2
1,919,733	-		CSW01_08885	0.76	+0.5
1,919,985	+		CSW01_08885	0.83	+0.7
1,920,002	+		CSW01_08885	0.83	+0.3
1,920,020	+		CSW01_08885	0.84	+0.2
1,920,096	-		CSW01_08885	0.86	-0.2
1,920,103	-		CSW01_08885	0.86	+1.3
1,920,109	+		CSW01_08885	0.86	-0.3
1,920,117	-		CSW01_08885	0.86	+0.3
1,920,160	+		CSW01_08885	0.87	+0.4
1,920,160	-		CSW01_08885	0.87	-0.3
1,920,168	-		CSW01_08885	0.88	+0.2
1,920,184	-		CSW01_08885	0.88	-0.3
1,920,266	-				+0.3
1,920,356	+				+0.2
1,920,365	-				+1.0
1,920,365	-				+0.4
1,920,445	+				+0.0
1,920,453	-				+0.6
1,920,453	-				-0.8
1,920,596	+				-0.7
1,920,596	+				-0.1
1,920,604	-				+0.5
1,920,604	-				+0.7
1,920,631	+				+0.4
1,920,659	-				+0.1
1,920,659	-				+0.2
1,920,679	-				-0.6
1,920,774	+		CSW01_08890	0.15	-0.4
1,920,792	-		CSW01_08890	0.17	+1.2
1,920,805	+		CSW01_08890	0.18	+0.0
1,920,838	+		CSW01_08890	0.22	+0.6
1,920,846	-		CSW01_08890	0.23	+0.8
1,920,846	-		CSW01_08890	0.23	+0.2
1,920,866	-		CSW01_08890	0.25	-0.0
1,920,866	-		CSW01_08890	0.25	+0.2
1,920,870	+		CSW01_08890	0.26	+0.4
1,920,877	+		CSW01_08890	0.27	+1.2
1,920,942	+		CSW01_08890	0.34	-1.1
1,920,942	+		CSW01_08890	0.34	-0.2
1,920,942	+		CSW01_08890	0.34	-1.8
1,920,942	+		CSW01_08890	0.34	-0.0
1,920,950	-		CSW01_08890	0.35	+0.4
1,920,950	-		CSW01_08890	0.35	+0.7
1,920,951	+		CSW01_08890	0.35	+0.4
1,920,971	-		CSW01_08890	0.38	-0.1
1,920,971	-		CSW01_08890	0.38	+0.6
1,921,016	+		CSW01_08890	0.43	-1.0
1,921,018	+		CSW01_08890	0.43	-1.0
1,921,024	-		CSW01_08890	0.44	+0.8
1,921,036	+		CSW01_08890	0.45	+0.2
1,921,136	+		CSW01_08890	0.57	+0.8
1,921,136	+		CSW01_08890	0.57	+0.5
1,921,136	+		CSW01_08890	0.57	+0.0
1,921,136	+		CSW01_08890	0.57	-0.3
1,921,136	+		CSW01_08890	0.57	+1.1
1,921,136	+		CSW01_08890	0.57	-0.2
1,921,136	+		CSW01_08890	0.57	+0.2
1,921,136	+		CSW01_08890	0.57	+1.0
1,921,136	+		CSW01_08890	0.57	+0.6
1,921,136	+		CSW01_08890	0.57	+0.6
1,921,136	+		CSW01_08890	0.57	+0.4
1,921,136	+		CSW01_08890	0.57	+0.2
1,921,144	-		CSW01_08890	0.58	+0.3
1,921,144	-		CSW01_08890	0.58	+1.1
1,921,144	-		CSW01_08890	0.58	+1.1
1,921,144	-		CSW01_08890	0.58	+0.7
1,921,144	-		CSW01_08890	0.58	+0.2
1,921,144	-		CSW01_08890	0.58	-0.2
1,921,144	-		CSW01_08890	0.58	+0.4
1,921,144	-		CSW01_08890	0.58	+0.5
1,921,144	-		CSW01_08890	0.58	+0.5
1,921,144	-		CSW01_08890	0.58	+0.6
1,921,144	-		CSW01_08890	0.58	-0.4
1,921,144	-		CSW01_08890	0.58	+0.1
1,921,161	+		CSW01_08890	0.60	-0.6
1,921,171	+		CSW01_08890	0.61	-0.2
1,921,171	+		CSW01_08890	0.61	+0.6
1,921,179	-		CSW01_08890	0.62	-1.8
1,921,251	-		CSW01_08890	0.70	+0.5
1,921,281	+		CSW01_08890	0.74	+1.3
1,921,281	+		CSW01_08890	0.74	-0.5
1,921,289	-		CSW01_08890	0.75	-0.7
1,921,293	+		CSW01_08890	0.75	+0.5
1,921,293	+		CSW01_08890	0.75	+0.1
1,921,459	-				+0.3
1,921,459	-				-0.1
1,921,463	+				+0.3
1,921,463	+				+0.8
1,921,491	-				-0.0
1,921,562	-				+0.2
1,921,562	-				+0.3
1,921,612	+				+0.2
1,921,612	+				+0.3
1,921,667	+				+0.4
1,921,674	+				-0.8
1,921,675	-				-0.2
1,921,814	+		CSW01_08895	0.23	-0.1
1,921,898	+		CSW01_08895	0.30	-0.0
1,921,931	-		CSW01_08895	0.34	-0.5
1,921,956	-		CSW01_08895	0.36	+0.3
1,921,960	+		CSW01_08895	0.36	+1.5
1,921,971	+		CSW01_08895	0.37	-0.2
1,921,979	-		CSW01_08895	0.38	-0.5
1,921,980	+		CSW01_08895	0.38	-0.0
1,921,981	+		CSW01_08895	0.38	-0.1
1,921,988	-		CSW01_08895	0.39	-0.2
1,921,989	-		CSW01_08895	0.39	-0.2
1,921,990	-		CSW01_08895	0.39	-0.2
1,921,990	-		CSW01_08895	0.39	+0.9
1,922,046	-		CSW01_08895	0.44	+0.6
1,922,048	-		CSW01_08895	0.44	+0.1
1,922,057	+		CSW01_08895	0.45	-0.2
1,922,069	+		CSW01_08895	0.46	+0.0
1,922,074	+		CSW01_08895	0.47	+1.1
1,922,077	-		CSW01_08895	0.47	-0.2
1,922,079	-		CSW01_08895	0.47	+0.4
1,922,081	+		CSW01_08895	0.48	-0.2
1,922,084	-		CSW01_08895	0.48	+0.0
1,922,087	-		CSW01_08895	0.48	+0.6
1,922,093	+		CSW01_08895	0.49	-0.0
1,922,093	+		CSW01_08895	0.49	-0.8
1,922,101	-		CSW01_08895	0.49	+0.2
1,922,278	-		CSW01_08895	0.66	-0.6
1,922,278	-		CSW01_08895	0.66	+0.2
1,922,286	-		CSW01_08895	0.67	+0.1
1,922,289	-		CSW01_08895	0.67	+0.3
1,922,319	+		CSW01_08895	0.70	+0.1
1,922,319	+		CSW01_08895	0.70	-1.1
1,922,319	+		CSW01_08895	0.70	-0.2
1,922,319	+		CSW01_08895	0.70	-0.1
1,922,319	+		CSW01_08895	0.70	+0.4
1,922,319	+		CSW01_08895	0.70	+0.5
1,922,319	+		CSW01_08895	0.70	+0.4
1,922,319	+		CSW01_08895	0.70	-1.0
1,922,319	+		CSW01_08895	0.70	-0.0
1,922,327	-		CSW01_08895	0.70	-0.0
1,922,327	-		CSW01_08895	0.70	-1.4
1,922,340	+		CSW01_08895	0.72	-0.2
1,922,354	+		CSW01_08895	0.73	-1.1
1,922,362	-		CSW01_08895	0.74	+0.1
1,922,388	+		CSW01_08895	0.76	+0.2
1,922,394	+		CSW01_08895	0.77	-0.8
1,922,397	+		CSW01_08895	0.77	-0.3
1,922,397	+		CSW01_08895	0.77	-0.6
1,922,402	-		CSW01_08895	0.77	-0.1
1,922,426	+		CSW01_08895	0.80	-0.0
1,922,429	+		CSW01_08895	0.80	+0.2
1,922,437	-		CSW01_08895	0.81	-0.3
1,922,443	+		CSW01_08895	0.81	+0.3
1,922,450	-		CSW01_08895	0.82	+0.5
1,922,450	-		CSW01_08895	0.82	+0.2
1,922,451	-		CSW01_08895	0.82	-0.0
1,922,451	-		CSW01_08895	0.82	-0.8
1,922,452	+		CSW01_08895	0.82	+1.3
1,922,490	+		CSW01_08895	0.86	+0.4
1,922,498	-		CSW01_08895	0.86	+0.6