Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08885

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08880 and CSW01_08885 overlap by 19 nucleotidesCSW01_08885 and CSW01_08890 are separated by 27 nucleotidesCSW01_08890 and CSW01_08895 are separated by 64 nucleotides CSW01_08880: CSW01_08880 - hypothetical protein, at 1,914,912 to 1,916,975 _08880 CSW01_08885: CSW01_08885 - hypothetical protein, at 1,916,957 to 1,920,619 _08885 CSW01_08890: CSW01_08890 - YafY family transcriptional regulator, at 1,920,647 to 1,921,507 _08890 CSW01_08895: CSW01_08895 - kelch domain-containing protein, at 1,921,572 to 1,922,642 _08895 Position (kb) 1916 1917 1918 1919 1920 1921Strain fitness (log2 ratio) -2 -1 0 1 2at 1916.013 kb on + strand, within CSW01_08880at 1916.013 kb on + strand, within CSW01_08880at 1916.013 kb on + strand, within CSW01_08880at 1916.021 kb on - strand, within CSW01_08880at 1916.048 kb on + strand, within CSW01_08880at 1916.090 kb on + strand, within CSW01_08880at 1916.090 kb on + strand, within CSW01_08880at 1916.098 kb on - strand, within CSW01_08880at 1916.098 kb on - strand, within CSW01_08880at 1916.186 kb on - strand, within CSW01_08880at 1916.187 kb on - strand, within CSW01_08880at 1916.200 kb on + strand, within CSW01_08880at 1916.419 kb on + strand, within CSW01_08880at 1916.421 kb on - strand, within CSW01_08880at 1916.485 kb on - strand, within CSW01_08880at 1916.492 kb on - strand, within CSW01_08880at 1916.618 kb on - strand, within CSW01_08880at 1916.618 kb on - strand, within CSW01_08880at 1916.819 kb on - strandat 1916.827 kb on + strandat 1916.835 kb on - strandat 1916.835 kb on - strandat 1916.845 kb on - strandat 1916.847 kb on + strandat 1916.847 kb on + strandat 1916.855 kb on - strandat 1916.891 kb on - strandat 1916.953 kb on + strandat 1916.961 kb on - strandat 1916.995 kb on - strandat 1917.205 kb on - strandat 1917.320 kb on + strandat 1917.329 kb on + strand, within CSW01_08885at 1917.356 kb on + strand, within CSW01_08885at 1917.428 kb on + strand, within CSW01_08885at 1917.436 kb on - strand, within CSW01_08885at 1917.459 kb on + strand, within CSW01_08885at 1917.468 kb on - strand, within CSW01_08885at 1917.472 kb on + strand, within CSW01_08885at 1917.480 kb on - strand, within CSW01_08885at 1917.516 kb on + strand, within CSW01_08885at 1917.546 kb on - strand, within CSW01_08885at 1917.589 kb on - strand, within CSW01_08885at 1917.589 kb on - strand, within CSW01_08885at 1917.594 kb on + strand, within CSW01_08885at 1917.594 kb on + strand, within CSW01_08885at 1917.602 kb on - strand, within CSW01_08885at 1917.666 kb on + strand, within CSW01_08885at 1917.666 kb on + strand, within CSW01_08885at 1917.674 kb on - strand, within CSW01_08885at 1917.764 kb on - strand, within CSW01_08885at 1917.806 kb on - strand, within CSW01_08885at 1917.810 kb on + strand, within CSW01_08885at 1917.810 kb on + strand, within CSW01_08885at 1917.828 kb on + strand, within CSW01_08885at 1917.961 kb on + strand, within CSW01_08885at 1917.961 kb on + strand, within CSW01_08885at 1918.179 kb on - strand, within CSW01_08885at 1918.181 kb on + strand, within CSW01_08885at 1918.188 kb on - strand, within CSW01_08885at 1918.197 kb on - strand, within CSW01_08885at 1918.214 kb on + strand, within CSW01_08885at 1918.214 kb on + strand, within CSW01_08885at 1918.224 kb on - strand, within CSW01_08885at 1918.224 kb on - strand, within CSW01_08885at 1918.232 kb on - strand, within CSW01_08885at 1918.268 kb on - strand, within CSW01_08885at 1918.365 kb on + strand, within CSW01_08885at 1918.365 kb on + strand, within CSW01_08885at 1918.365 kb on + strand, within CSW01_08885at 1918.365 kb on + strand, within CSW01_08885at 1918.365 kb on + strand, within CSW01_08885at 1918.365 kb on + strand, within CSW01_08885at 1918.365 kb on + strand, within CSW01_08885at 1918.373 kb on - strand, within CSW01_08885at 1918.473 kb on + strand, within CSW01_08885at 1918.481 kb on - strand, within CSW01_08885at 1918.483 kb on + strand, within CSW01_08885at 1918.499 kb on + strand, within CSW01_08885at 1918.499 kb on + strand, within CSW01_08885at 1918.499 kb on + strand, within CSW01_08885at 1918.507 kb on - strand, within CSW01_08885at 1918.517 kb on - strand, within CSW01_08885at 1918.526 kb on + strand, within CSW01_08885at 1918.573 kb on + strand, within CSW01_08885at 1918.598 kb on + strand, within CSW01_08885at 1918.873 kb on + strand, within CSW01_08885at 1918.873 kb on + strand, within CSW01_08885at 1918.873 kb on + strand, within CSW01_08885at 1918.894 kb on + strand, within CSW01_08885at 1918.902 kb on - strand, within CSW01_08885at 1918.902 kb on - strand, within CSW01_08885at 1918.970 kb on - strand, within CSW01_08885at 1919.062 kb on + strand, within CSW01_08885at 1919.103 kb on - strand, within CSW01_08885at 1919.194 kb on + strand, within CSW01_08885at 1919.262 kb on + strand, within CSW01_08885at 1919.263 kb on - strand, within CSW01_08885at 1919.321 kb on + strand, within CSW01_08885at 1919.333 kb on + strand, within CSW01_08885at 1919.432 kb on + strand, within CSW01_08885at 1919.440 kb on - strand, within CSW01_08885at 1919.485 kb on + strand, within CSW01_08885at 1919.485 kb on + strand, within CSW01_08885at 1919.513 kb on + strand, within CSW01_08885at 1919.642 kb on - strand, within CSW01_08885at 1919.699 kb on - strand, within CSW01_08885at 1919.720 kb on + strand, within CSW01_08885at 1919.733 kb on - strand, within CSW01_08885at 1919.985 kb on + strand, within CSW01_08885at 1920.002 kb on + strand, within CSW01_08885at 1920.020 kb on + strand, within CSW01_08885at 1920.096 kb on - strand, within CSW01_08885at 1920.103 kb on - strand, within CSW01_08885at 1920.109 kb on + strand, within CSW01_08885at 1920.117 kb on - strand, within CSW01_08885at 1920.160 kb on + strand, within CSW01_08885at 1920.160 kb on - strand, within CSW01_08885at 1920.168 kb on - strand, within CSW01_08885at 1920.184 kb on - strand, within CSW01_08885at 1920.266 kb on - strandat 1920.356 kb on + strandat 1920.365 kb on - strandat 1920.365 kb on - strandat 1920.445 kb on + strandat 1920.453 kb on - strandat 1920.453 kb on - strandat 1920.596 kb on + strandat 1920.596 kb on + strandat 1920.604 kb on - strandat 1920.604 kb on - strandat 1920.631 kb on + strandat 1920.659 kb on - strandat 1920.659 kb on - strandat 1920.679 kb on - strandat 1920.774 kb on + strand, within CSW01_08890at 1920.792 kb on - strand, within CSW01_08890at 1920.805 kb on + strand, within CSW01_08890at 1920.838 kb on + strand, within CSW01_08890at 1920.846 kb on - strand, within CSW01_08890at 1920.846 kb on - strand, within CSW01_08890at 1920.866 kb on - strand, within CSW01_08890at 1920.866 kb on - strand, within CSW01_08890at 1920.870 kb on + strand, within CSW01_08890at 1920.877 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.942 kb on + strand, within CSW01_08890at 1920.950 kb on - strand, within CSW01_08890at 1920.950 kb on - strand, within CSW01_08890at 1920.951 kb on + strand, within CSW01_08890at 1920.971 kb on - strand, within CSW01_08890at 1920.971 kb on - strand, within CSW01_08890at 1921.016 kb on + strand, within CSW01_08890at 1921.018 kb on + strand, within CSW01_08890at 1921.024 kb on - strand, within CSW01_08890at 1921.036 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.136 kb on + strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.144 kb on - strand, within CSW01_08890at 1921.161 kb on + strand, within CSW01_08890at 1921.171 kb on + strand, within CSW01_08890at 1921.171 kb on + strand, within CSW01_08890at 1921.179 kb on - strand, within CSW01_08890at 1921.251 kb on - strand, within CSW01_08890at 1921.281 kb on + strand, within CSW01_08890at 1921.281 kb on + strand, within CSW01_08890at 1921.289 kb on - strand, within CSW01_08890at 1921.293 kb on + strand, within CSW01_08890at 1921.293 kb on + strand, within CSW01_08890at 1921.459 kb on - strandat 1921.459 kb on - strandat 1921.463 kb on + strandat 1921.463 kb on + strandat 1921.491 kb on - strandat 1921.562 kb on - strandat 1921.562 kb on - strandat 1921.612 kb on + strandat 1921.612 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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1,916,013 + CSW01_08880 0.53 +0.2
1,916,013 + CSW01_08880 0.53 +0.5
1,916,013 + CSW01_08880 0.53 +0.0
1,916,021 - CSW01_08880 0.54 -0.1
1,916,048 + CSW01_08880 0.55 +0.4
1,916,090 + CSW01_08880 0.57 +0.2
1,916,090 + CSW01_08880 0.57 +0.5
1,916,098 - CSW01_08880 0.57 -0.3
1,916,098 - CSW01_08880 0.57 +0.6
1,916,186 - CSW01_08880 0.62 +0.4
1,916,187 - CSW01_08880 0.62 -0.9
1,916,200 + CSW01_08880 0.62 +0.6
1,916,419 + CSW01_08880 0.73 -0.3
1,916,421 - CSW01_08880 0.73 +1.1
1,916,485 - CSW01_08880 0.76 -0.1
1,916,492 - CSW01_08880 0.77 -0.9
1,916,618 - CSW01_08880 0.83 +0.1
1,916,618 - CSW01_08880 0.83 +0.9
1,916,819 - -0.6
1,916,827 + +0.1
1,916,835 - -0.0
1,916,835 - -0.6
1,916,845 - +0.9
1,916,847 + -0.5
1,916,847 + -0.4
1,916,855 - -0.1
1,916,891 - +0.5
1,916,953 + -0.3
1,916,961 - -0.4
1,916,995 - +0.3
1,917,205 - +0.1
1,917,320 + +0.3
1,917,329 + CSW01_08885 0.10 -0.1
1,917,356 + CSW01_08885 0.11 +0.3
1,917,428 + CSW01_08885 0.13 -0.5
1,917,436 - CSW01_08885 0.13 -0.4
1,917,459 + CSW01_08885 0.14 -0.5
1,917,468 - CSW01_08885 0.14 -0.0
1,917,472 + CSW01_08885 0.14 -0.2
1,917,480 - CSW01_08885 0.14 -0.8
1,917,516 + CSW01_08885 0.15 +0.1
1,917,546 - CSW01_08885 0.16 -1.2
1,917,589 - CSW01_08885 0.17 +0.1
1,917,589 - CSW01_08885 0.17 -0.4
1,917,594 + CSW01_08885 0.17 +0.3
1,917,594 + CSW01_08885 0.17 +0.6
1,917,602 - CSW01_08885 0.18 -1.2
1,917,666 + CSW01_08885 0.19 -0.1
1,917,666 + CSW01_08885 0.19 +0.0
1,917,674 - CSW01_08885 0.20 -0.3
1,917,764 - CSW01_08885 0.22 -0.0
1,917,806 - CSW01_08885 0.23 +0.4
1,917,810 + CSW01_08885 0.23 +0.6
1,917,810 + CSW01_08885 0.23 -0.5
1,917,828 + CSW01_08885 0.24 -0.3
1,917,961 + CSW01_08885 0.27 -0.0
1,917,961 + CSW01_08885 0.27 +0.5
1,918,179 - CSW01_08885 0.33 +0.4
1,918,181 + CSW01_08885 0.33 -0.1
1,918,188 - CSW01_08885 0.34 -0.5
1,918,197 - CSW01_08885 0.34 -0.0
1,918,214 + CSW01_08885 0.34 -0.1
1,918,214 + CSW01_08885 0.34 -0.1
1,918,224 - CSW01_08885 0.35 +0.2
1,918,224 - CSW01_08885 0.35 +0.5
1,918,232 - CSW01_08885 0.35 +0.9
1,918,268 - CSW01_08885 0.36 -0.4
1,918,365 + CSW01_08885 0.38 -0.5
1,918,365 + CSW01_08885 0.38 +0.1
1,918,365 + CSW01_08885 0.38 +0.6
1,918,365 + CSW01_08885 0.38 -0.4
1,918,365 + CSW01_08885 0.38 -1.3
1,918,365 + CSW01_08885 0.38 +0.8
1,918,365 + CSW01_08885 0.38 +0.2
1,918,373 - CSW01_08885 0.39 -0.2
1,918,473 + CSW01_08885 0.41 -0.6
1,918,481 - CSW01_08885 0.42 +1.1
1,918,483 + CSW01_08885 0.42 -1.1
1,918,499 + CSW01_08885 0.42 -0.2
1,918,499 + CSW01_08885 0.42 +0.4
1,918,499 + CSW01_08885 0.42 +0.4
1,918,507 - CSW01_08885 0.42 -0.3
1,918,517 - CSW01_08885 0.43 +0.2
1,918,526 + CSW01_08885 0.43 -1.0
1,918,573 + CSW01_08885 0.44 +0.4
1,918,598 + CSW01_08885 0.45 +1.6
1,918,873 + CSW01_08885 0.52 -2.0
1,918,873 + CSW01_08885 0.52 -0.8
1,918,873 + CSW01_08885 0.52 -0.4
1,918,894 + CSW01_08885 0.53 +0.1
1,918,902 - CSW01_08885 0.53 +0.0
1,918,902 - CSW01_08885 0.53 +0.3
1,918,970 - CSW01_08885 0.55 +0.1
1,919,062 + CSW01_08885 0.57 +0.5
1,919,103 - CSW01_08885 0.59 +1.3
1,919,194 + CSW01_08885 0.61 +0.1
1,919,262 + CSW01_08885 0.63 -0.3
1,919,263 - CSW01_08885 0.63 +0.5
1,919,321 + CSW01_08885 0.65 +2.0
1,919,333 + CSW01_08885 0.65 +0.8
1,919,432 + CSW01_08885 0.68 -1.1
1,919,440 - CSW01_08885 0.68 +0.1
1,919,485 + CSW01_08885 0.69 +1.0
1,919,485 + CSW01_08885 0.69 +0.6
1,919,513 + CSW01_08885 0.70 +1.0
1,919,642 - CSW01_08885 0.73 -0.5
1,919,699 - CSW01_08885 0.75 +0.1
1,919,720 + CSW01_08885 0.75 -0.2
1,919,733 - CSW01_08885 0.76 +0.5
1,919,985 + CSW01_08885 0.83 +0.7
1,920,002 + CSW01_08885 0.83 +0.3
1,920,020 + CSW01_08885 0.84 +0.2
1,920,096 - CSW01_08885 0.86 -0.2
1,920,103 - CSW01_08885 0.86 +1.3
1,920,109 + CSW01_08885 0.86 -0.3
1,920,117 - CSW01_08885 0.86 +0.3
1,920,160 + CSW01_08885 0.87 +0.4
1,920,160 - CSW01_08885 0.87 -0.3
1,920,168 - CSW01_08885 0.88 +0.2
1,920,184 - CSW01_08885 0.88 -0.3
1,920,266 - +0.3
1,920,356 + +0.2
1,920,365 - +1.0
1,920,365 - +0.4
1,920,445 + +0.0
1,920,453 - +0.6
1,920,453 - -0.8
1,920,596 + -0.7
1,920,596 + -0.1
1,920,604 - +0.5
1,920,604 - +0.7
1,920,631 + +0.4
1,920,659 - +0.1
1,920,659 - +0.2
1,920,679 - -0.6
1,920,774 + CSW01_08890 0.15 -0.4
1,920,792 - CSW01_08890 0.17 +1.2
1,920,805 + CSW01_08890 0.18 +0.0
1,920,838 + CSW01_08890 0.22 +0.6
1,920,846 - CSW01_08890 0.23 +0.8
1,920,846 - CSW01_08890 0.23 +0.2
1,920,866 - CSW01_08890 0.25 -0.0
1,920,866 - CSW01_08890 0.25 +0.2
1,920,870 + CSW01_08890 0.26 +0.4
1,920,877 + CSW01_08890 0.27 +1.2
1,920,942 + CSW01_08890 0.34 -1.1
1,920,942 + CSW01_08890 0.34 -0.2
1,920,942 + CSW01_08890 0.34 -1.8
1,920,942 + CSW01_08890 0.34 -0.0
1,920,950 - CSW01_08890 0.35 +0.4
1,920,950 - CSW01_08890 0.35 +0.7
1,920,951 + CSW01_08890 0.35 +0.4
1,920,971 - CSW01_08890 0.38 -0.1
1,920,971 - CSW01_08890 0.38 +0.6
1,921,016 + CSW01_08890 0.43 -1.0
1,921,018 + CSW01_08890 0.43 -1.0
1,921,024 - CSW01_08890 0.44 +0.8
1,921,036 + CSW01_08890 0.45 +0.2
1,921,136 + CSW01_08890 0.57 +0.8
1,921,136 + CSW01_08890 0.57 +0.5
1,921,136 + CSW01_08890 0.57 +0.0
1,921,136 + CSW01_08890 0.57 -0.3
1,921,136 + CSW01_08890 0.57 +1.1
1,921,136 + CSW01_08890 0.57 -0.2
1,921,136 + CSW01_08890 0.57 +0.2
1,921,136 + CSW01_08890 0.57 +1.0
1,921,136 + CSW01_08890 0.57 +0.6
1,921,136 + CSW01_08890 0.57 +0.6
1,921,136 + CSW01_08890 0.57 +0.4
1,921,136 + CSW01_08890 0.57 +0.2
1,921,144 - CSW01_08890 0.58 +0.3
1,921,144 - CSW01_08890 0.58 +1.1
1,921,144 - CSW01_08890 0.58 +1.1
1,921,144 - CSW01_08890 0.58 +0.7
1,921,144 - CSW01_08890 0.58 +0.2
1,921,144 - CSW01_08890 0.58 -0.2
1,921,144 - CSW01_08890 0.58 +0.4
1,921,144 - CSW01_08890 0.58 +0.5
1,921,144 - CSW01_08890 0.58 +0.5
1,921,144 - CSW01_08890 0.58 +0.6
1,921,144 - CSW01_08890 0.58 -0.4
1,921,144 - CSW01_08890 0.58 +0.1
1,921,161 + CSW01_08890 0.60 -0.6
1,921,171 + CSW01_08890 0.61 -0.2
1,921,171 + CSW01_08890 0.61 +0.6
1,921,179 - CSW01_08890 0.62 -1.8
1,921,251 - CSW01_08890 0.70 +0.5
1,921,281 + CSW01_08890 0.74 +1.3
1,921,281 + CSW01_08890 0.74 -0.5
1,921,289 - CSW01_08890 0.75 -0.7
1,921,293 + CSW01_08890 0.75 +0.5
1,921,293 + CSW01_08890 0.75 +0.1
1,921,459 - +0.3
1,921,459 - -0.1
1,921,463 + +0.3
1,921,463 + +0.8
1,921,491 - -0.0
1,921,562 - +0.2
1,921,562 - +0.3
1,921,612 + +0.2
1,921,612 + +0.3

Or see this region's nucleotide sequence