Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07550 and CSW01_07555 are separated by 101 nucleotides CSW01_07555 and CSW01_07560 overlap by 8 nucleotides CSW01_07560 and CSW01_07565 are separated by 275 nucleotides
CSW01_07550: CSW01_07550 - GntR family transcriptional regulator, at 1,616,026 to 1,616,859
_07550
CSW01_07555: CSW01_07555 - hypothetical protein, at 1,616,961 to 1,618,310
_07555
CSW01_07560: CSW01_07560 - DUF4442 domain-containing protein, at 1,618,303 to 1,618,779
_07560
CSW01_07565: CSW01_07565 - 3-deoxy-7-phosphoheptulonate synthase, at 1,619,055 to 1,620,116
_07565
Position (kb)
1616
1617
1618
1619 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1615.978 kb on - strand at 1616.031 kb on - strand at 1616.204 kb on + strand, within CSW01_07550 at 1616.204 kb on + strand, within CSW01_07550 at 1616.212 kb on - strand, within CSW01_07550 at 1616.276 kb on + strand, within CSW01_07550 at 1616.284 kb on - strand, within CSW01_07550 at 1616.296 kb on - strand, within CSW01_07550 at 1616.352 kb on - strand, within CSW01_07550 at 1616.382 kb on + strand, within CSW01_07550 at 1616.382 kb on + strand, within CSW01_07550 at 1616.566 kb on + strand, within CSW01_07550 at 1616.834 kb on - strand at 1616.857 kb on - strand at 1616.904 kb on + strand at 1616.914 kb on - strand at 1617.022 kb on + strand at 1617.022 kb on + strand at 1617.058 kb on - strand at 1617.112 kb on + strand, within CSW01_07555 at 1617.220 kb on + strand, within CSW01_07555 at 1617.265 kb on - strand, within CSW01_07555 at 1617.297 kb on - strand, within CSW01_07555 at 1617.304 kb on - strand, within CSW01_07555 at 1617.327 kb on - strand, within CSW01_07555 at 1617.432 kb on + strand, within CSW01_07555 at 1617.440 kb on - strand, within CSW01_07555 at 1617.440 kb on - strand, within CSW01_07555 at 1617.512 kb on + strand, within CSW01_07555 at 1617.520 kb on - strand, within CSW01_07555 at 1617.520 kb on - strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.538 kb on + strand, within CSW01_07555 at 1617.546 kb on - strand, within CSW01_07555 at 1617.546 kb on - strand, within CSW01_07555 at 1617.546 kb on - strand, within CSW01_07555 at 1617.546 kb on - strand, within CSW01_07555 at 1617.546 kb on - strand, within CSW01_07555 at 1617.546 kb on - strand, within CSW01_07555 at 1617.546 kb on - strand, within CSW01_07555 at 1617.556 kb on - strand, within CSW01_07555 at 1617.681 kb on + strand, within CSW01_07555 at 1617.687 kb on + strand, within CSW01_07555 at 1617.694 kb on - strand, within CSW01_07555 at 1617.699 kb on + strand, within CSW01_07555 at 1617.699 kb on + strand, within CSW01_07555 at 1617.707 kb on - strand, within CSW01_07555 at 1617.788 kb on - strand, within CSW01_07555 at 1617.842 kb on - strand, within CSW01_07555 at 1618.223 kb on + strand at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.365 kb on + strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.373 kb on - strand, within CSW01_07560 at 1618.383 kb on - strand, within CSW01_07560 at 1618.392 kb on + strand, within CSW01_07560 at 1618.392 kb on - strand, within CSW01_07560 at 1618.424 kb on + strand, within CSW01_07560 at 1618.548 kb on + strand, within CSW01_07560 at 1618.558 kb on + strand, within CSW01_07560 at 1618.660 kb on - strand, within CSW01_07560 at 1618.670 kb on - strand, within CSW01_07560 at 1618.719 kb on - strand, within CSW01_07560 at 1618.740 kb on + strand at 1618.740 kb on + strand at 1618.745 kb on + strand at 1618.748 kb on - strand at 1618.748 kb on - strand at 1618.748 kb on - strand at 1618.768 kb on + strand at 1618.776 kb on - strand at 1619.020 kb on + strand at 1619.115 kb on + strand at 1619.138 kb on - strand at 1619.272 kb on - strand, within CSW01_07565
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A remove 1,615,978 - +0.1 1,616,031 - -0.2 1,616,204 + CSW01_07550 0.21 +1.1 1,616,204 + CSW01_07550 0.21 -0.2 1,616,212 - CSW01_07550 0.22 +0.0 1,616,276 + CSW01_07550 0.30 -0.2 1,616,284 - CSW01_07550 0.31 +0.6 1,616,296 - CSW01_07550 0.32 -0.3 1,616,352 - CSW01_07550 0.39 -0.1 1,616,382 + CSW01_07550 0.43 +0.2 1,616,382 + CSW01_07550 0.43 -0.3 1,616,566 + CSW01_07550 0.65 -0.1 1,616,834 - -1.5 1,616,857 - -0.1 1,616,904 + +0.8 1,616,914 - -0.0 1,617,022 + +0.2 1,617,022 + +0.5 1,617,058 - -0.2 1,617,112 + CSW01_07555 0.11 -0.2 1,617,220 + CSW01_07555 0.19 -0.2 1,617,265 - CSW01_07555 0.23 -0.6 1,617,297 - CSW01_07555 0.25 -0.5 1,617,304 - CSW01_07555 0.25 +0.7 1,617,327 - CSW01_07555 0.27 +0.4 1,617,432 + CSW01_07555 0.35 +0.2 1,617,440 - CSW01_07555 0.35 -0.2 1,617,440 - CSW01_07555 0.35 -1.4 1,617,512 + CSW01_07555 0.41 -1.0 1,617,520 - CSW01_07555 0.41 -0.2 1,617,520 - CSW01_07555 0.41 -0.7 1,617,538 + CSW01_07555 0.43 +0.3 1,617,538 + CSW01_07555 0.43 -0.6 1,617,538 + CSW01_07555 0.43 -0.8 1,617,538 + CSW01_07555 0.43 -0.4 1,617,538 + CSW01_07555 0.43 +1.8 1,617,538 + CSW01_07555 0.43 -0.6 1,617,538 + CSW01_07555 0.43 +1.7 1,617,538 + CSW01_07555 0.43 -0.3 1,617,538 + CSW01_07555 0.43 +0.3 1,617,538 + CSW01_07555 0.43 +0.3 1,617,538 + CSW01_07555 0.43 +0.2 1,617,546 - CSW01_07555 0.43 -0.8 1,617,546 - CSW01_07555 0.43 -1.0 1,617,546 - CSW01_07555 0.43 +0.3 1,617,546 - CSW01_07555 0.43 -0.2 1,617,546 - CSW01_07555 0.43 -0.6 1,617,546 - CSW01_07555 0.43 +1.4 1,617,546 - CSW01_07555 0.43 -0.2 1,617,556 - CSW01_07555 0.44 +0.6 1,617,681 + CSW01_07555 0.53 -0.2 1,617,687 + CSW01_07555 0.54 -0.2 1,617,694 - CSW01_07555 0.54 +0.2 1,617,699 + CSW01_07555 0.55 -0.9 1,617,699 + CSW01_07555 0.55 -0.7 1,617,707 - CSW01_07555 0.55 -0.0 1,617,788 - CSW01_07555 0.61 +0.1 1,617,842 - CSW01_07555 0.65 +0.0 1,618,223 + +0.8 1,618,365 + CSW01_07560 0.13 +0.8 1,618,365 + CSW01_07560 0.13 -0.1 1,618,365 + CSW01_07560 0.13 +0.4 1,618,365 + CSW01_07560 0.13 -0.9 1,618,365 + CSW01_07560 0.13 +0.3 1,618,365 + CSW01_07560 0.13 +0.6 1,618,365 + CSW01_07560 0.13 -0.8 1,618,365 + CSW01_07560 0.13 +0.5 1,618,365 + CSW01_07560 0.13 +0.8 1,618,365 + CSW01_07560 0.13 +0.6 1,618,373 - CSW01_07560 0.15 +0.3 1,618,373 - CSW01_07560 0.15 +0.2 1,618,373 - CSW01_07560 0.15 -0.2 1,618,373 - CSW01_07560 0.15 +0.1 1,618,373 - CSW01_07560 0.15 +0.1 1,618,373 - CSW01_07560 0.15 -1.9 1,618,373 - CSW01_07560 0.15 -0.2 1,618,373 - CSW01_07560 0.15 -2.0 1,618,373 - CSW01_07560 0.15 +0.5 1,618,373 - CSW01_07560 0.15 +0.4 1,618,373 - CSW01_07560 0.15 +0.6 1,618,373 - CSW01_07560 0.15 +0.0 1,618,373 - CSW01_07560 0.15 +0.1 1,618,383 - CSW01_07560 0.17 +0.6 1,618,392 + CSW01_07560 0.19 +0.0 1,618,392 - CSW01_07560 0.19 +1.0 1,618,424 + CSW01_07560 0.25 +0.7 1,618,548 + CSW01_07560 0.51 +0.4 1,618,558 + CSW01_07560 0.53 +0.7 1,618,660 - CSW01_07560 0.75 -0.4 1,618,670 - CSW01_07560 0.77 +0.2 1,618,719 - CSW01_07560 0.87 -0.2 1,618,740 + +0.5 1,618,740 + +1.0 1,618,745 + -0.1 1,618,748 - -0.2 1,618,748 - -0.4 1,618,748 - +0.4 1,618,768 + +1.1 1,618,776 - -2.0 1,619,020 + +0.2 1,619,115 + -0.3 1,619,138 - +0.9 1,619,272 - CSW01_07565 0.20 -0.3
Or see this region's nucleotide sequence