Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_06230 and CSW01_06235 overlap by 10 nucleotides CSW01_06235 and CSW01_06240 are separated by 16 nucleotides CSW01_06240 and CSW01_06245 are separated by 145 nucleotides
CSW01_06230: CSW01_06230 - LrgB family protein, at 1,304,860 to 1,305,534
_06230
CSW01_06235: CSW01_06235 - hypothetical protein, at 1,305,525 to 1,305,914
_06235
CSW01_06240: CSW01_06240 - exodeoxyribonuclease I, at 1,305,931 to 1,307,355
_06240
CSW01_06245: CSW01_06245 - L-cystine transporter, at 1,307,501 to 1,308,916
_06245
Position (kb)
1305
1306
1307
1308 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1304.991 kb on + strand, within CSW01_06230 at 1304.999 kb on - strand, within CSW01_06230 at 1305.010 kb on - strand, within CSW01_06230 at 1305.010 kb on - strand, within CSW01_06230 at 1305.021 kb on - strand, within CSW01_06230 at 1305.036 kb on + strand, within CSW01_06230 at 1305.044 kb on - strand, within CSW01_06230 at 1305.044 kb on - strand, within CSW01_06230 at 1305.049 kb on - strand, within CSW01_06230 at 1305.077 kb on + strand, within CSW01_06230 at 1305.155 kb on - strand, within CSW01_06230 at 1305.206 kb on - strand, within CSW01_06230 at 1305.249 kb on + strand, within CSW01_06230 at 1305.257 kb on - strand, within CSW01_06230 at 1305.365 kb on + strand, within CSW01_06230 at 1305.455 kb on + strand, within CSW01_06230 at 1305.468 kb on - strand at 1305.473 kb on - strand at 1305.580 kb on - strand, within CSW01_06235 at 1305.673 kb on - strand, within CSW01_06235 at 1305.732 kb on - strand, within CSW01_06235 at 1305.793 kb on - strand, within CSW01_06235 at 1305.884 kb on - strand at 1306.076 kb on + strand, within CSW01_06240 at 1306.084 kb on - strand, within CSW01_06240 at 1306.113 kb on - strand, within CSW01_06240 at 1306.183 kb on + strand, within CSW01_06240 at 1306.197 kb on + strand, within CSW01_06240 at 1306.269 kb on + strand, within CSW01_06240 at 1306.553 kb on + strand, within CSW01_06240 at 1306.554 kb on + strand, within CSW01_06240 at 1306.642 kb on - strand, within CSW01_06240 at 1306.733 kb on + strand, within CSW01_06240 at 1306.733 kb on + strand, within CSW01_06240 at 1306.826 kb on + strand, within CSW01_06240 at 1306.828 kb on + strand, within CSW01_06240 at 1306.833 kb on + strand, within CSW01_06240 at 1306.836 kb on - strand, within CSW01_06240 at 1306.841 kb on - strand, within CSW01_06240 at 1306.841 kb on - strand, within CSW01_06240 at 1306.841 kb on - strand, within CSW01_06240 at 1307.025 kb on - strand, within CSW01_06240 at 1307.053 kb on + strand, within CSW01_06240 at 1307.128 kb on + strand, within CSW01_06240 at 1307.175 kb on + strand, within CSW01_06240 at 1307.264 kb on + strand at 1307.272 kb on - strand at 1307.302 kb on - strand at 1307.395 kb on + strand at 1307.404 kb on - strand at 1307.404 kb on - strand at 1307.430 kb on - strand at 1307.493 kb on + strand at 1307.498 kb on + strand at 1307.561 kb on - strand at 1307.610 kb on + strand at 1307.618 kb on - strand at 1307.657 kb on + strand, within CSW01_06245 at 1307.665 kb on - strand, within CSW01_06245 at 1307.665 kb on - strand, within CSW01_06245 at 1307.708 kb on + strand, within CSW01_06245 at 1307.762 kb on + strand, within CSW01_06245 at 1307.781 kb on + strand, within CSW01_06245 at 1307.789 kb on - strand, within CSW01_06245 at 1307.834 kb on - strand, within CSW01_06245 at 1307.875 kb on - strand, within CSW01_06245 at 1307.983 kb on - strand, within CSW01_06245 at 1308.013 kb on + strand, within CSW01_06245 at 1308.049 kb on - strand, within CSW01_06245 at 1308.064 kb on - strand, within CSW01_06245 at 1308.064 kb on - strand, within CSW01_06245 at 1308.194 kb on + strand, within CSW01_06245 at 1308.206 kb on + strand, within CSW01_06245 at 1308.206 kb on + strand, within CSW01_06245 at 1308.277 kb on + strand, within CSW01_06245 at 1308.295 kb on - strand, within CSW01_06245 at 1308.323 kb on + strand, within CSW01_06245 at 1308.331 kb on - strand, within CSW01_06245 at 1308.346 kb on - strand, within CSW01_06245
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A remove 1,304,991 + CSW01_06230 0.19 -0.0 1,304,999 - CSW01_06230 0.21 -0.9 1,305,010 - CSW01_06230 0.22 +0.9 1,305,010 - CSW01_06230 0.22 -0.0 1,305,021 - CSW01_06230 0.24 -0.3 1,305,036 + CSW01_06230 0.26 -0.4 1,305,044 - CSW01_06230 0.27 +0.8 1,305,044 - CSW01_06230 0.27 +0.3 1,305,049 - CSW01_06230 0.28 +1.2 1,305,077 + CSW01_06230 0.32 +0.3 1,305,155 - CSW01_06230 0.44 -0.6 1,305,206 - CSW01_06230 0.51 +0.6 1,305,249 + CSW01_06230 0.58 +0.4 1,305,257 - CSW01_06230 0.59 +0.1 1,305,365 + CSW01_06230 0.75 +1.0 1,305,455 + CSW01_06230 0.88 +0.2 1,305,468 - +0.6 1,305,473 - +0.4 1,305,580 - CSW01_06235 0.14 +0.3 1,305,673 - CSW01_06235 0.38 +1.0 1,305,732 - CSW01_06235 0.53 +0.5 1,305,793 - CSW01_06235 0.69 +0.4 1,305,884 - +0.1 1,306,076 + CSW01_06240 0.10 -0.2 1,306,084 - CSW01_06240 0.11 -0.3 1,306,113 - CSW01_06240 0.13 +0.1 1,306,183 + CSW01_06240 0.18 -1.0 1,306,197 + CSW01_06240 0.19 +0.4 1,306,269 + CSW01_06240 0.24 +0.8 1,306,553 + CSW01_06240 0.44 +0.4 1,306,554 + CSW01_06240 0.44 -1.5 1,306,642 - CSW01_06240 0.50 -0.3 1,306,733 + CSW01_06240 0.56 -0.4 1,306,733 + CSW01_06240 0.56 -0.5 1,306,826 + CSW01_06240 0.63 +0.4 1,306,828 + CSW01_06240 0.63 -0.3 1,306,833 + CSW01_06240 0.63 -0.4 1,306,836 - CSW01_06240 0.64 -0.9 1,306,841 - CSW01_06240 0.64 +1.0 1,306,841 - CSW01_06240 0.64 +0.5 1,306,841 - CSW01_06240 0.64 -0.2 1,307,025 - CSW01_06240 0.77 -0.3 1,307,053 + CSW01_06240 0.79 -0.9 1,307,128 + CSW01_06240 0.84 -0.5 1,307,175 + CSW01_06240 0.87 +0.1 1,307,264 + -0.0 1,307,272 - +0.5 1,307,302 - +3.3 1,307,395 + +1.0 1,307,404 - +0.4 1,307,404 - -0.1 1,307,430 - -0.4 1,307,493 + +0.1 1,307,498 + +0.7 1,307,561 - +0.8 1,307,610 + -0.5 1,307,618 - -0.3 1,307,657 + CSW01_06245 0.11 -0.0 1,307,665 - CSW01_06245 0.12 +1.2 1,307,665 - CSW01_06245 0.12 +1.7 1,307,708 + CSW01_06245 0.15 +1.2 1,307,762 + CSW01_06245 0.18 -0.7 1,307,781 + CSW01_06245 0.20 +1.8 1,307,789 - CSW01_06245 0.20 +0.3 1,307,834 - CSW01_06245 0.24 +0.0 1,307,875 - CSW01_06245 0.26 -0.1 1,307,983 - CSW01_06245 0.34 -0.0 1,308,013 + CSW01_06245 0.36 -0.4 1,308,049 - CSW01_06245 0.39 +1.2 1,308,064 - CSW01_06245 0.40 +0.5 1,308,064 - CSW01_06245 0.40 +0.5 1,308,194 + CSW01_06245 0.49 +0.2 1,308,206 + CSW01_06245 0.50 +0.0 1,308,206 + CSW01_06245 0.50 +0.3 1,308,277 + CSW01_06245 0.55 -0.4 1,308,295 - CSW01_06245 0.56 +0.6 1,308,323 + CSW01_06245 0.58 -0.2 1,308,331 - CSW01_06245 0.59 +1.0 1,308,346 - CSW01_06245 0.60 +0.4
Or see this region's nucleotide sequence