Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06240

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06230 and CSW01_06235 overlap by 10 nucleotidesCSW01_06235 and CSW01_06240 are separated by 16 nucleotidesCSW01_06240 and CSW01_06245 are separated by 145 nucleotides CSW01_06230: CSW01_06230 - LrgB family protein, at 1,304,860 to 1,305,534 _06230 CSW01_06235: CSW01_06235 - hypothetical protein, at 1,305,525 to 1,305,914 _06235 CSW01_06240: CSW01_06240 - exodeoxyribonuclease I, at 1,305,931 to 1,307,355 _06240 CSW01_06245: CSW01_06245 - L-cystine transporter, at 1,307,501 to 1,308,916 _06245 Position (kb) 1305 1306 1307 1308Strain fitness (log2 ratio) -1 0 1 2 3at 1304.991 kb on + strand, within CSW01_06230at 1304.999 kb on - strand, within CSW01_06230at 1305.010 kb on - strand, within CSW01_06230at 1305.010 kb on - strand, within CSW01_06230at 1305.021 kb on - strand, within CSW01_06230at 1305.036 kb on + strand, within CSW01_06230at 1305.044 kb on - strand, within CSW01_06230at 1305.044 kb on - strand, within CSW01_06230at 1305.049 kb on - strand, within CSW01_06230at 1305.077 kb on + strand, within CSW01_06230at 1305.155 kb on - strand, within CSW01_06230at 1305.206 kb on - strand, within CSW01_06230at 1305.249 kb on + strand, within CSW01_06230at 1305.257 kb on - strand, within CSW01_06230at 1305.365 kb on + strand, within CSW01_06230at 1305.455 kb on + strand, within CSW01_06230at 1305.468 kb on - strandat 1305.473 kb on - strandat 1305.580 kb on - strand, within CSW01_06235at 1305.673 kb on - strand, within CSW01_06235at 1305.732 kb on - strand, within CSW01_06235at 1305.793 kb on - strand, within CSW01_06235at 1305.884 kb on - strandat 1306.076 kb on + strand, within CSW01_06240at 1306.084 kb on - strand, within CSW01_06240at 1306.113 kb on - strand, within CSW01_06240at 1306.183 kb on + strand, within CSW01_06240at 1306.197 kb on + strand, within CSW01_06240at 1306.269 kb on + strand, within CSW01_06240at 1306.553 kb on + strand, within CSW01_06240at 1306.554 kb on + strand, within CSW01_06240at 1306.642 kb on - strand, within CSW01_06240at 1306.733 kb on + strand, within CSW01_06240at 1306.733 kb on + strand, within CSW01_06240at 1306.826 kb on + strand, within CSW01_06240at 1306.828 kb on + strand, within CSW01_06240at 1306.833 kb on + strand, within CSW01_06240at 1306.836 kb on - strand, within CSW01_06240at 1306.841 kb on - strand, within CSW01_06240at 1306.841 kb on - strand, within CSW01_06240at 1306.841 kb on - strand, within CSW01_06240at 1307.025 kb on - strand, within CSW01_06240at 1307.053 kb on + strand, within CSW01_06240at 1307.128 kb on + strand, within CSW01_06240at 1307.175 kb on + strand, within CSW01_06240at 1307.264 kb on + strandat 1307.272 kb on - strandat 1307.302 kb on - strandat 1307.395 kb on + strandat 1307.404 kb on - strandat 1307.404 kb on - strandat 1307.430 kb on - strandat 1307.493 kb on + strandat 1307.498 kb on + strandat 1307.561 kb on - strandat 1307.610 kb on + strandat 1307.618 kb on - strandat 1307.657 kb on + strand, within CSW01_06245at 1307.665 kb on - strand, within CSW01_06245at 1307.665 kb on - strand, within CSW01_06245at 1307.708 kb on + strand, within CSW01_06245at 1307.762 kb on + strand, within CSW01_06245at 1307.781 kb on + strand, within CSW01_06245at 1307.789 kb on - strand, within CSW01_06245at 1307.834 kb on - strand, within CSW01_06245at 1307.875 kb on - strand, within CSW01_06245at 1307.983 kb on - strand, within CSW01_06245at 1308.013 kb on + strand, within CSW01_06245at 1308.049 kb on - strand, within CSW01_06245at 1308.064 kb on - strand, within CSW01_06245at 1308.064 kb on - strand, within CSW01_06245at 1308.194 kb on + strand, within CSW01_06245at 1308.206 kb on + strand, within CSW01_06245at 1308.206 kb on + strand, within CSW01_06245at 1308.277 kb on + strand, within CSW01_06245at 1308.295 kb on - strand, within CSW01_06245at 1308.323 kb on + strand, within CSW01_06245at 1308.331 kb on - strand, within CSW01_06245at 1308.346 kb on - strand, within CSW01_06245

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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1,304,991 + CSW01_06230 0.19 -0.0
1,304,999 - CSW01_06230 0.21 -0.9
1,305,010 - CSW01_06230 0.22 +0.9
1,305,010 - CSW01_06230 0.22 -0.0
1,305,021 - CSW01_06230 0.24 -0.3
1,305,036 + CSW01_06230 0.26 -0.4
1,305,044 - CSW01_06230 0.27 +0.8
1,305,044 - CSW01_06230 0.27 +0.3
1,305,049 - CSW01_06230 0.28 +1.2
1,305,077 + CSW01_06230 0.32 +0.3
1,305,155 - CSW01_06230 0.44 -0.6
1,305,206 - CSW01_06230 0.51 +0.6
1,305,249 + CSW01_06230 0.58 +0.4
1,305,257 - CSW01_06230 0.59 +0.1
1,305,365 + CSW01_06230 0.75 +1.0
1,305,455 + CSW01_06230 0.88 +0.2
1,305,468 - +0.6
1,305,473 - +0.4
1,305,580 - CSW01_06235 0.14 +0.3
1,305,673 - CSW01_06235 0.38 +1.0
1,305,732 - CSW01_06235 0.53 +0.5
1,305,793 - CSW01_06235 0.69 +0.4
1,305,884 - +0.1
1,306,076 + CSW01_06240 0.10 -0.2
1,306,084 - CSW01_06240 0.11 -0.3
1,306,113 - CSW01_06240 0.13 +0.1
1,306,183 + CSW01_06240 0.18 -1.0
1,306,197 + CSW01_06240 0.19 +0.4
1,306,269 + CSW01_06240 0.24 +0.8
1,306,553 + CSW01_06240 0.44 +0.4
1,306,554 + CSW01_06240 0.44 -1.5
1,306,642 - CSW01_06240 0.50 -0.3
1,306,733 + CSW01_06240 0.56 -0.4
1,306,733 + CSW01_06240 0.56 -0.5
1,306,826 + CSW01_06240 0.63 +0.4
1,306,828 + CSW01_06240 0.63 -0.3
1,306,833 + CSW01_06240 0.63 -0.4
1,306,836 - CSW01_06240 0.64 -0.9
1,306,841 - CSW01_06240 0.64 +1.0
1,306,841 - CSW01_06240 0.64 +0.5
1,306,841 - CSW01_06240 0.64 -0.2
1,307,025 - CSW01_06240 0.77 -0.3
1,307,053 + CSW01_06240 0.79 -0.9
1,307,128 + CSW01_06240 0.84 -0.5
1,307,175 + CSW01_06240 0.87 +0.1
1,307,264 + -0.0
1,307,272 - +0.5
1,307,302 - +3.3
1,307,395 + +1.0
1,307,404 - +0.4
1,307,404 - -0.1
1,307,430 - -0.4
1,307,493 + +0.1
1,307,498 + +0.7
1,307,561 - +0.8
1,307,610 + -0.5
1,307,618 - -0.3
1,307,657 + CSW01_06245 0.11 -0.0
1,307,665 - CSW01_06245 0.12 +1.2
1,307,665 - CSW01_06245 0.12 +1.7
1,307,708 + CSW01_06245 0.15 +1.2
1,307,762 + CSW01_06245 0.18 -0.7
1,307,781 + CSW01_06245 0.20 +1.8
1,307,789 - CSW01_06245 0.20 +0.3
1,307,834 - CSW01_06245 0.24 +0.0
1,307,875 - CSW01_06245 0.26 -0.1
1,307,983 - CSW01_06245 0.34 -0.0
1,308,013 + CSW01_06245 0.36 -0.4
1,308,049 - CSW01_06245 0.39 +1.2
1,308,064 - CSW01_06245 0.40 +0.5
1,308,064 - CSW01_06245 0.40 +0.5
1,308,194 + CSW01_06245 0.49 +0.2
1,308,206 + CSW01_06245 0.50 +0.0
1,308,206 + CSW01_06245 0.50 +0.3
1,308,277 + CSW01_06245 0.55 -0.4
1,308,295 - CSW01_06245 0.56 +0.6
1,308,323 + CSW01_06245 0.58 -0.2
1,308,331 - CSW01_06245 0.59 +1.0
1,308,346 - CSW01_06245 0.60 +0.4

Or see this region's nucleotide sequence