Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04725

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04720 and CSW01_04725 overlap by 4 nucleotidesCSW01_04725 and CSW01_04730 overlap by 4 nucleotides CSW01_04720: CSW01_04720 - glycosyl transferase family 1, at 981,123 to 982,271 _04720 CSW01_04725: CSW01_04725 - sugar transporter, at 982,268 to 983,677 _04725 CSW01_04730: CSW01_04730 - hypothetical protein, at 983,674 to 984,894 _04730 Position (kb) 982 983 984Strain fitness (log2 ratio) -2 -1 0 1 2at 981.270 kb on - strand, within CSW01_04720at 981.284 kb on + strand, within CSW01_04720at 981.318 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.440 kb on + strand, within CSW01_04720at 981.452 kb on - strand, within CSW01_04720at 981.454 kb on - strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.497 kb on - strand, within CSW01_04720at 981.576 kb on - strand, within CSW01_04720at 981.682 kb on + strand, within CSW01_04720at 981.685 kb on - strand, within CSW01_04720at 981.713 kb on + strand, within CSW01_04720at 981.722 kb on + strand, within CSW01_04720at 981.756 kb on - strand, within CSW01_04720at 981.792 kb on + strand, within CSW01_04720at 981.800 kb on - strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.805 kb on + strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.813 kb on - strand, within CSW01_04720at 981.899 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.934 kb on + strand, within CSW01_04720at 981.944 kb on + strand, within CSW01_04720at 982.005 kb on + strand, within CSW01_04720at 982.012 kb on + strand, within CSW01_04720at 982.093 kb on + strand, within CSW01_04720at 982.157 kb on - strandat 982.298 kb on + strandat 982.366 kb on + strandat 982.366 kb on + strandat 982.376 kb on + strandat 982.387 kb on + strandat 982.453 kb on + strand, within CSW01_04725at 982.461 kb on - strand, within CSW01_04725at 982.461 kb on - strand, within CSW01_04725at 982.483 kb on + strand, within CSW01_04725at 982.493 kb on + strand, within CSW01_04725at 982.527 kb on - strand, within CSW01_04725at 982.544 kb on - strand, within CSW01_04725at 982.654 kb on - strand, within CSW01_04725at 982.656 kb on + strand, within CSW01_04725at 982.722 kb on + strand, within CSW01_04725at 982.723 kb on - strand, within CSW01_04725at 982.730 kb on - strand, within CSW01_04725at 982.738 kb on + strand, within CSW01_04725at 982.778 kb on + strand, within CSW01_04725at 982.778 kb on + strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.786 kb on - strand, within CSW01_04725at 982.810 kb on + strand, within CSW01_04725at 982.818 kb on - strand, within CSW01_04725at 982.846 kb on + strand, within CSW01_04725at 982.846 kb on + strand, within CSW01_04725at 982.854 kb on - strand, within CSW01_04725at 982.854 kb on - strand, within CSW01_04725at 982.898 kb on + strand, within CSW01_04725at 982.906 kb on + strand, within CSW01_04725at 982.981 kb on - strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.032 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.086 kb on + strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.094 kb on - strand, within CSW01_04725at 983.181 kb on - strand, within CSW01_04725at 983.181 kb on - strand, within CSW01_04725at 983.188 kb on + strand, within CSW01_04725at 983.212 kb on + strand, within CSW01_04725at 983.220 kb on - strand, within CSW01_04725at 983.220 kb on - strand, within CSW01_04725at 983.295 kb on + strand, within CSW01_04725at 983.305 kb on + strand, within CSW01_04725at 983.395 kb on - strand, within CSW01_04725at 983.395 kb on - strand, within CSW01_04725at 983.397 kb on + strand, within CSW01_04725at 983.405 kb on - strand, within CSW01_04725at 983.407 kb on - strand, within CSW01_04725at 983.446 kb on - strand, within CSW01_04725at 983.453 kb on + strand, within CSW01_04725at 983.458 kb on + strand, within CSW01_04725at 983.465 kb on - strand, within CSW01_04725at 983.468 kb on + strand, within CSW01_04725at 983.496 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.506 kb on + strand, within CSW01_04725at 983.514 kb on - strand, within CSW01_04725at 983.539 kb on - strandat 983.567 kb on + strandat 983.567 kb on + strandat 983.575 kb on - strandat 983.575 kb on - strandat 983.575 kb on - strandat 983.588 kb on + strandat 983.612 kb on + strandat 983.668 kb on + strandat 983.769 kb on - strandat 983.814 kb on - strand, within CSW01_04730at 983.849 kb on - strand, within CSW01_04730at 983.852 kb on + strand, within CSW01_04730at 983.860 kb on - strand, within CSW01_04730at 983.879 kb on + strand, within CSW01_04730at 983.889 kb on + strand, within CSW01_04730at 983.964 kb on + strand, within CSW01_04730at 983.973 kb on + strand, within CSW01_04730at 983.973 kb on + strand, within CSW01_04730at 983.981 kb on - strand, within CSW01_04730at 984.022 kb on + strand, within CSW01_04730at 984.022 kb on + strand, within CSW01_04730at 984.022 kb on + strand, within CSW01_04730at 984.030 kb on - strand, within CSW01_04730at 984.043 kb on + strand, within CSW01_04730at 984.119 kb on - strand, within CSW01_04730at 984.126 kb on + strand, within CSW01_04730at 984.128 kb on + strand, within CSW01_04730at 984.128 kb on + strand, within CSW01_04730at 984.128 kb on + strand, within CSW01_04730at 984.134 kb on - strand, within CSW01_04730at 984.134 kb on - strand, within CSW01_04730at 984.136 kb on - strand, within CSW01_04730at 984.136 kb on - strand, within CSW01_04730at 984.190 kb on + strand, within CSW01_04730at 984.190 kb on + strand, within CSW01_04730at 984.190 kb on + strand, within CSW01_04730at 984.251 kb on + strand, within CSW01_04730at 984.289 kb on - strand, within CSW01_04730at 984.289 kb on - strand, within CSW01_04730at 984.321 kb on - strand, within CSW01_04730at 984.415 kb on + strand, within CSW01_04730at 984.470 kb on + strand, within CSW01_04730at 984.471 kb on + strand, within CSW01_04730at 984.472 kb on + strand, within CSW01_04730at 984.478 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.490 kb on - strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.563 kb on - strand, within CSW01_04730at 984.570 kb on - strand, within CSW01_04730at 984.576 kb on + strand, within CSW01_04730at 984.576 kb on + strand, within CSW01_04730at 984.666 kb on - strand, within CSW01_04730at 984.666 kb on - strand, within CSW01_04730

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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981,270 - CSW01_04720 0.13 +0.2
981,284 + CSW01_04720 0.14 +2.0
981,318 + CSW01_04720 0.17 +0.6
981,365 + CSW01_04720 0.21 +0.7
981,365 + CSW01_04720 0.21 +0.3
981,440 + CSW01_04720 0.28 +0.3
981,452 - CSW01_04720 0.29 -0.3
981,454 - CSW01_04720 0.29 +0.8
981,489 + CSW01_04720 0.32 -0.1
981,489 + CSW01_04720 0.32 +0.4
981,497 - CSW01_04720 0.33 -0.4
981,576 - CSW01_04720 0.39 +1.0
981,682 + CSW01_04720 0.49 +0.5
981,685 - CSW01_04720 0.49 +0.7
981,713 + CSW01_04720 0.51 -0.1
981,722 + CSW01_04720 0.52 +0.4
981,756 - CSW01_04720 0.55 -0.2
981,792 + CSW01_04720 0.58 +0.9
981,800 - CSW01_04720 0.59 +0.0
981,805 + CSW01_04720 0.59 +0.5
981,805 + CSW01_04720 0.59 +1.3
981,805 + CSW01_04720 0.59 +0.1
981,805 + CSW01_04720 0.59 -0.2
981,813 - CSW01_04720 0.60 +0.9
981,813 - CSW01_04720 0.60 -0.3
981,813 - CSW01_04720 0.60 -0.8
981,813 - CSW01_04720 0.60 -0.5
981,813 - CSW01_04720 0.60 +0.9
981,813 - CSW01_04720 0.60 +0.2
981,899 + CSW01_04720 0.68 +0.3
981,934 + CSW01_04720 0.71 -0.4
981,934 + CSW01_04720 0.71 +1.8
981,934 + CSW01_04720 0.71 +0.4
981,934 + CSW01_04720 0.71 -1.0
981,944 + CSW01_04720 0.71 +0.0
982,005 + CSW01_04720 0.77 +0.1
982,012 + CSW01_04720 0.77 +0.3
982,093 + CSW01_04720 0.84 +0.6
982,157 - -0.7
982,298 + +0.7
982,366 + -1.2
982,366 + +0.1
982,376 + +0.4
982,387 + +0.7
982,453 + CSW01_04725 0.13 +0.1
982,461 - CSW01_04725 0.14 -0.1
982,461 - CSW01_04725 0.14 +0.7
982,483 + CSW01_04725 0.15 +0.3
982,493 + CSW01_04725 0.16 +1.1
982,527 - CSW01_04725 0.18 +0.8
982,544 - CSW01_04725 0.20 +0.1
982,654 - CSW01_04725 0.27 +0.3
982,656 + CSW01_04725 0.28 -0.7
982,722 + CSW01_04725 0.32 -0.3
982,723 - CSW01_04725 0.32 +0.8
982,730 - CSW01_04725 0.33 +0.1
982,738 + CSW01_04725 0.33 +0.3
982,778 + CSW01_04725 0.36 +0.6
982,778 + CSW01_04725 0.36 +0.2
982,786 - CSW01_04725 0.37 +1.0
982,786 - CSW01_04725 0.37 -0.6
982,786 - CSW01_04725 0.37 +0.1
982,810 + CSW01_04725 0.38 -0.1
982,818 - CSW01_04725 0.39 -0.8
982,846 + CSW01_04725 0.41 +0.1
982,846 + CSW01_04725 0.41 +0.5
982,854 - CSW01_04725 0.42 +0.6
982,854 - CSW01_04725 0.42 +0.6
982,898 + CSW01_04725 0.45 -0.1
982,906 + CSW01_04725 0.45 +0.3
982,981 - CSW01_04725 0.51 +0.7
983,032 + CSW01_04725 0.54 +0.2
983,032 + CSW01_04725 0.54 +0.7
983,032 + CSW01_04725 0.54 +1.4
983,086 + CSW01_04725 0.58 +0.2
983,086 + CSW01_04725 0.58 +0.4
983,086 + CSW01_04725 0.58 -0.1
983,086 + CSW01_04725 0.58 +0.1
983,094 - CSW01_04725 0.59 +0.1
983,094 - CSW01_04725 0.59 +0.0
983,094 - CSW01_04725 0.59 +0.6
983,181 - CSW01_04725 0.65 -1.1
983,181 - CSW01_04725 0.65 +0.4
983,188 + CSW01_04725 0.65 -1.1
983,212 + CSW01_04725 0.67 -0.2
983,220 - CSW01_04725 0.68 +1.0
983,220 - CSW01_04725 0.68 +0.1
983,295 + CSW01_04725 0.73 +0.4
983,305 + CSW01_04725 0.74 +0.5
983,395 - CSW01_04725 0.80 -0.3
983,395 - CSW01_04725 0.80 +0.6
983,397 + CSW01_04725 0.80 +0.8
983,405 - CSW01_04725 0.81 +0.7
983,407 - CSW01_04725 0.81 +1.8
983,446 - CSW01_04725 0.84 +0.1
983,453 + CSW01_04725 0.84 +0.4
983,458 + CSW01_04725 0.84 +0.1
983,465 - CSW01_04725 0.85 -0.0
983,468 + CSW01_04725 0.85 -0.3
983,496 + CSW01_04725 0.87 +1.0
983,506 + CSW01_04725 0.88 +0.3
983,506 + CSW01_04725 0.88 +1.0
983,506 + CSW01_04725 0.88 +0.3
983,506 + CSW01_04725 0.88 +1.2
983,506 + CSW01_04725 0.88 +0.3
983,514 - CSW01_04725 0.88 +0.9
983,539 - +0.4
983,567 + +0.3
983,567 + +0.2
983,575 - +0.3
983,575 - +0.8
983,575 - -0.1
983,588 + -0.1
983,612 + +0.9
983,668 + +0.0
983,769 - +0.6
983,814 - CSW01_04730 0.11 +0.3
983,849 - CSW01_04730 0.14 +0.4
983,852 + CSW01_04730 0.15 -0.1
983,860 - CSW01_04730 0.15 -0.3
983,879 + CSW01_04730 0.17 -0.2
983,889 + CSW01_04730 0.18 +1.0
983,964 + CSW01_04730 0.24 +0.3
983,973 + CSW01_04730 0.24 -0.8
983,973 + CSW01_04730 0.24 +0.8
983,981 - CSW01_04730 0.25 +1.4
984,022 + CSW01_04730 0.29 +0.0
984,022 + CSW01_04730 0.29 -0.8
984,022 + CSW01_04730 0.29 +0.3
984,030 - CSW01_04730 0.29 +0.1
984,043 + CSW01_04730 0.30 +0.9
984,119 - CSW01_04730 0.36 -0.1
984,126 + CSW01_04730 0.37 +2.2
984,128 + CSW01_04730 0.37 +0.6
984,128 + CSW01_04730 0.37 +0.4
984,128 + CSW01_04730 0.37 +0.7
984,134 - CSW01_04730 0.38 +0.7
984,134 - CSW01_04730 0.38 +0.1
984,136 - CSW01_04730 0.38 +0.5
984,136 - CSW01_04730 0.38 +0.6
984,190 + CSW01_04730 0.42 +1.2
984,190 + CSW01_04730 0.42 +1.4
984,190 + CSW01_04730 0.42 +0.0
984,251 + CSW01_04730 0.47 -0.6
984,289 - CSW01_04730 0.50 -0.7
984,289 - CSW01_04730 0.50 +1.2
984,321 - CSW01_04730 0.53 +0.1
984,415 + CSW01_04730 0.61 +0.5
984,470 + CSW01_04730 0.65 -2.1
984,471 + CSW01_04730 0.65 -0.2
984,472 + CSW01_04730 0.65 -0.7
984,478 - CSW01_04730 0.66 -0.1
984,479 - CSW01_04730 0.66 +1.0
984,479 - CSW01_04730 0.66 -1.4
984,479 - CSW01_04730 0.66 +0.3
984,479 - CSW01_04730 0.66 +0.9
984,490 - CSW01_04730 0.67 -0.5
984,555 + CSW01_04730 0.72 -0.5
984,555 + CSW01_04730 0.72 +0.7
984,555 + CSW01_04730 0.72 -1.2
984,555 + CSW01_04730 0.72 +0.4
984,563 - CSW01_04730 0.73 +0.4
984,570 - CSW01_04730 0.73 +0.4
984,576 + CSW01_04730 0.74 +0.5
984,576 + CSW01_04730 0.74 +0.9
984,666 - CSW01_04730 0.81 +0.3
984,666 - CSW01_04730 0.81 +1.1

Or see this region's nucleotide sequence