Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04140

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04130 and CSW01_04135 overlap by 4 nucleotidesCSW01_04135 and CSW01_04140 overlap by 23 nucleotidesCSW01_04140 and CSW01_04145 are separated by 346 nucleotidesCSW01_04145 and CSW01_04150 are separated by 74 nucleotides CSW01_04130: CSW01_04130 - citrate lyase subunit alpha, at 854,203 to 855,732 _04130 CSW01_04135: CSW01_04135 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 855,729 to 856,265 _04135 CSW01_04140: CSW01_04140 - triphosphoribosyl-dephospho-CoA synthase, at 856,243 to 857,184 _04140 CSW01_04145: CSW01_04145 - transporter, at 857,531 to 857,929 _04145 CSW01_04150: CSW01_04150 - RNA methyltransferase, at 858,004 to 858,777 _04150 Position (kb) 856 857 858Strain fitness (log2 ratio) -2 -1 0 1 2 3at 855.252 kb on - strand, within CSW01_04130at 855.327 kb on + strand, within CSW01_04130at 855.358 kb on - strand, within CSW01_04130at 855.359 kb on + strand, within CSW01_04130at 855.393 kb on - strand, within CSW01_04130at 855.430 kb on + strand, within CSW01_04130at 855.455 kb on - strand, within CSW01_04130at 855.485 kb on - strand, within CSW01_04130at 855.517 kb on + strand, within CSW01_04130at 855.517 kb on + strand, within CSW01_04130at 855.525 kb on - strand, within CSW01_04130at 855.717 kb on + strandat 855.725 kb on + strandat 855.733 kb on - strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.765 kb on - strandat 855.776 kb on + strandat 855.875 kb on - strand, within CSW01_04135at 855.880 kb on - strand, within CSW01_04135at 855.927 kb on - strand, within CSW01_04135at 856.129 kb on - strand, within CSW01_04135at 856.136 kb on - strand, within CSW01_04135at 856.168 kb on - strand, within CSW01_04135at 856.178 kb on + strand, within CSW01_04135at 856.186 kb on - strand, within CSW01_04135at 856.207 kb on - strand, within CSW01_04135at 856.212 kb on - strandat 856.212 kb on - strandat 856.212 kb on - strandat 856.272 kb on + strandat 856.285 kb on + strandat 856.314 kb on - strandat 856.357 kb on + strand, within CSW01_04140at 856.360 kb on - strand, within CSW01_04140at 856.364 kb on + strand, within CSW01_04140at 856.445 kb on + strand, within CSW01_04140at 856.480 kb on - strand, within CSW01_04140at 856.509 kb on - strand, within CSW01_04140at 856.509 kb on - strand, within CSW01_04140at 856.544 kb on + strand, within CSW01_04140at 856.573 kb on - strand, within CSW01_04140at 856.599 kb on + strand, within CSW01_04140at 856.600 kb on - strand, within CSW01_04140at 856.667 kb on - strand, within CSW01_04140at 856.674 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.751 kb on - strand, within CSW01_04140at 856.755 kb on + strand, within CSW01_04140at 856.797 kb on + strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.831 kb on + strand, within CSW01_04140at 856.837 kb on + strand, within CSW01_04140at 856.839 kb on - strand, within CSW01_04140at 856.896 kb on + strand, within CSW01_04140at 856.896 kb on + strand, within CSW01_04140at 856.904 kb on - strand, within CSW01_04140at 856.904 kb on - strand, within CSW01_04140at 856.906 kb on + strand, within CSW01_04140at 856.912 kb on + strand, within CSW01_04140at 856.995 kb on - strand, within CSW01_04140at 856.995 kb on - strand, within CSW01_04140at 857.061 kb on + strand, within CSW01_04140at 857.084 kb on - strand, within CSW01_04140at 857.100 kb on + strandat 857.165 kb on + strandat 857.178 kb on + strandat 857.178 kb on + strandat 857.186 kb on - strandat 857.221 kb on - strandat 857.482 kb on + strandat 857.602 kb on + strand, within CSW01_04145at 857.610 kb on - strand, within CSW01_04145at 857.612 kb on + strand, within CSW01_04145at 857.648 kb on - strand, within CSW01_04145at 857.675 kb on + strand, within CSW01_04145at 857.689 kb on + strand, within CSW01_04145at 857.720 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.759 kb on - strand, within CSW01_04145at 857.759 kb on - strand, within CSW01_04145at 857.759 kb on - strand, within CSW01_04145at 857.772 kb on - strand, within CSW01_04145at 857.783 kb on + strand, within CSW01_04145at 857.810 kb on - strand, within CSW01_04145at 857.829 kb on + strand, within CSW01_04145at 857.854 kb on - strand, within CSW01_04145at 857.932 kb on - strandat 857.991 kb on - strandat 857.993 kb on - strandat 857.993 kb on - strandat 857.993 kb on - strandat 858.085 kb on - strand, within CSW01_04150at 858.085 kb on - strand, within CSW01_04150at 858.096 kb on + strand, within CSW01_04150at 858.104 kb on - strand, within CSW01_04150at 858.110 kb on + strand, within CSW01_04150at 858.111 kb on - strand, within CSW01_04150at 858.118 kb on - strand, within CSW01_04150at 858.141 kb on + strand, within CSW01_04150at 858.150 kb on + strand, within CSW01_04150

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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855,252 - CSW01_04130 0.69 +0.4
855,327 + CSW01_04130 0.73 +0.3
855,358 - CSW01_04130 0.75 +1.2
855,359 + CSW01_04130 0.76 +0.2
855,393 - CSW01_04130 0.78 +1.4
855,430 + CSW01_04130 0.80 -0.2
855,455 - CSW01_04130 0.82 +0.2
855,485 - CSW01_04130 0.84 +0.0
855,517 + CSW01_04130 0.86 -2.1
855,517 + CSW01_04130 0.86 +0.4
855,525 - CSW01_04130 0.86 +0.8
855,717 + +0.2
855,725 + -0.0
855,733 - +0.2
855,757 + +0.4
855,757 + +0.0
855,757 + +0.1
855,757 + +0.3
855,757 + +0.5
855,757 + -0.5
855,757 + -0.1
855,757 + -0.1
855,765 - +0.7
855,776 + -0.5
855,875 - CSW01_04135 0.27 +1.8
855,880 - CSW01_04135 0.28 -0.6
855,927 - CSW01_04135 0.37 +0.6
856,129 - CSW01_04135 0.74 +0.4
856,136 - CSW01_04135 0.76 -0.1
856,168 - CSW01_04135 0.82 +0.8
856,178 + CSW01_04135 0.84 +0.7
856,186 - CSW01_04135 0.85 +3.1
856,207 - CSW01_04135 0.89 +2.1
856,212 - -0.1
856,212 - +2.5
856,212 - +0.1
856,272 + +0.3
856,285 + -0.7
856,314 - -0.7
856,357 + CSW01_04140 0.12 +0.9
856,360 - CSW01_04140 0.12 +1.1
856,364 + CSW01_04140 0.13 +0.3
856,445 + CSW01_04140 0.21 -0.1
856,480 - CSW01_04140 0.25 -0.2
856,509 - CSW01_04140 0.28 +1.0
856,509 - CSW01_04140 0.28 -0.4
856,544 + CSW01_04140 0.32 +0.5
856,573 - CSW01_04140 0.35 +1.7
856,599 + CSW01_04140 0.38 -0.4
856,600 - CSW01_04140 0.38 +0.5
856,667 - CSW01_04140 0.45 +1.2
856,674 + CSW01_04140 0.46 +0.0
856,692 + CSW01_04140 0.48 -0.5
856,692 + CSW01_04140 0.48 -0.7
856,743 + CSW01_04140 0.53 +0.9
856,743 + CSW01_04140 0.53 -0.0
856,743 + CSW01_04140 0.53 +2.3
856,751 - CSW01_04140 0.54 +1.6
856,755 + CSW01_04140 0.54 +0.4
856,797 + CSW01_04140 0.59 +0.9
856,812 - CSW01_04140 0.60 -0.1
856,812 - CSW01_04140 0.60 +0.8
856,812 - CSW01_04140 0.60 +0.4
856,831 + CSW01_04140 0.62 -0.1
856,837 + CSW01_04140 0.63 -0.1
856,839 - CSW01_04140 0.63 +0.2
856,896 + CSW01_04140 0.69 +1.2
856,896 + CSW01_04140 0.69 +0.3
856,904 - CSW01_04140 0.70 +0.8
856,904 - CSW01_04140 0.70 +0.2
856,906 + CSW01_04140 0.70 +1.7
856,912 + CSW01_04140 0.71 +0.5
856,995 - CSW01_04140 0.80 -0.7
856,995 - CSW01_04140 0.80 +0.7
857,061 + CSW01_04140 0.87 -0.2
857,084 - CSW01_04140 0.89 -0.0
857,100 + +0.3
857,165 + +1.0
857,178 + +0.2
857,178 + +0.4
857,186 - -0.2
857,221 - +0.5
857,482 + -0.8
857,602 + CSW01_04145 0.18 +0.8
857,610 - CSW01_04145 0.20 +0.0
857,612 + CSW01_04145 0.20 +0.4
857,648 - CSW01_04145 0.29 +0.2
857,675 + CSW01_04145 0.36 +0.2
857,689 + CSW01_04145 0.40 +0.2
857,720 + CSW01_04145 0.47 -0.5
857,751 + CSW01_04145 0.55 -0.1
857,751 + CSW01_04145 0.55 -0.9
857,751 + CSW01_04145 0.55 +0.9
857,751 + CSW01_04145 0.55 +0.2
857,751 + CSW01_04145 0.55 +0.6
857,751 + CSW01_04145 0.55 +0.2
857,759 - CSW01_04145 0.57 +0.3
857,759 - CSW01_04145 0.57 +0.5
857,759 - CSW01_04145 0.57 -0.1
857,772 - CSW01_04145 0.60 -0.1
857,783 + CSW01_04145 0.63 +0.4
857,810 - CSW01_04145 0.70 +0.8
857,829 + CSW01_04145 0.75 +0.1
857,854 - CSW01_04145 0.81 +0.1
857,932 - +0.2
857,991 - +0.3
857,993 - +0.0
857,993 - +0.7
857,993 - +0.1
858,085 - CSW01_04150 0.10 +0.2
858,085 - CSW01_04150 0.10 -0.0
858,096 + CSW01_04150 0.12 -0.3
858,104 - CSW01_04150 0.13 +0.3
858,110 + CSW01_04150 0.14 -0.5
858,111 - CSW01_04150 0.14 -0.4
858,118 - CSW01_04150 0.15 -0.1
858,141 + CSW01_04150 0.18 -0.4
858,150 + CSW01_04150 0.19 +0.1

Or see this region's nucleotide sequence