Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03165

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03160 and CSW01_03165 are separated by 210 nucleotidesCSW01_03165 and CSW01_03170 are separated by 98 nucleotides CSW01_03160: CSW01_03160 - DNA/RNA nuclease SfsA, at 622,613 to 623,383 _03160 CSW01_03165: CSW01_03165 - hydrolase, at 623,594 to 624,946 _03165 CSW01_03170: CSW01_03170 - ATP-dependent helicase HrpB, at 625,045 to 627,507 _03170 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2 3at 622.646 kb on - strandat 622.686 kb on + strandat 622.686 kb on + strandat 622.694 kb on - strand, within CSW01_03160at 622.737 kb on + strand, within CSW01_03160at 622.749 kb on + strand, within CSW01_03160at 622.803 kb on - strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.848 kb on + strand, within CSW01_03160at 622.856 kb on + strand, within CSW01_03160at 622.864 kb on - strand, within CSW01_03160at 622.891 kb on + strand, within CSW01_03160at 622.908 kb on + strand, within CSW01_03160at 622.945 kb on + strand, within CSW01_03160at 622.953 kb on - strand, within CSW01_03160at 623.010 kb on + strand, within CSW01_03160at 623.017 kb on + strand, within CSW01_03160at 623.018 kb on - strand, within CSW01_03160at 623.040 kb on - strand, within CSW01_03160at 623.040 kb on - strand, within CSW01_03160at 623.047 kb on + strand, within CSW01_03160at 623.088 kb on + strand, within CSW01_03160at 623.096 kb on - strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.127 kb on + strand, within CSW01_03160at 623.135 kb on - strand, within CSW01_03160at 623.143 kb on + strand, within CSW01_03160at 623.143 kb on + strand, within CSW01_03160at 623.194 kb on + strand, within CSW01_03160at 623.199 kb on + strand, within CSW01_03160at 623.199 kb on + strand, within CSW01_03160at 623.207 kb on - strand, within CSW01_03160at 623.231 kb on - strand, within CSW01_03160at 623.232 kb on + strand, within CSW01_03160at 623.241 kb on + strand, within CSW01_03160at 623.324 kb on + strandat 623.362 kb on - strandat 623.381 kb on + strandat 623.451 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.461 kb on + strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.469 kb on - strandat 623.484 kb on + strandat 623.520 kb on + strandat 623.664 kb on + strandat 623.706 kb on - strandat 623.716 kb on - strandat 623.716 kb on - strandat 623.716 kb on - strandat 623.726 kb on - strandat 623.732 kb on - strand, within CSW01_03165at 623.766 kb on + strand, within CSW01_03165at 623.766 kb on + strand, within CSW01_03165at 623.774 kb on - strand, within CSW01_03165at 623.791 kb on + strand, within CSW01_03165at 623.814 kb on + strand, within CSW01_03165at 623.814 kb on + strand, within CSW01_03165at 623.822 kb on - strand, within CSW01_03165at 623.822 kb on - strand, within CSW01_03165at 623.914 kb on + strand, within CSW01_03165at 623.914 kb on + strand, within CSW01_03165at 623.914 kb on + strand, within CSW01_03165at 623.922 kb on - strand, within CSW01_03165at 623.922 kb on - strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.938 kb on + strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.946 kb on - strand, within CSW01_03165at 623.970 kb on - strand, within CSW01_03165at 623.977 kb on - strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.985 kb on + strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 623.993 kb on - strand, within CSW01_03165at 624.032 kb on + strand, within CSW01_03165at 624.045 kb on + strand, within CSW01_03165at 624.112 kb on - strand, within CSW01_03165at 624.123 kb on + strand, within CSW01_03165at 624.154 kb on - strand, within CSW01_03165at 624.180 kb on + strand, within CSW01_03165at 624.202 kb on - strand, within CSW01_03165at 624.297 kb on + strand, within CSW01_03165at 624.305 kb on - strand, within CSW01_03165at 624.306 kb on + strand, within CSW01_03165at 624.306 kb on + strand, within CSW01_03165at 624.306 kb on + strand, within CSW01_03165at 624.314 kb on - strand, within CSW01_03165at 624.362 kb on + strand, within CSW01_03165at 624.370 kb on - strand, within CSW01_03165at 624.370 kb on - strand, within CSW01_03165at 624.380 kb on - strand, within CSW01_03165at 624.395 kb on + strand, within CSW01_03165at 624.397 kb on + strand, within CSW01_03165at 624.397 kb on + strand, within CSW01_03165at 624.397 kb on + strand, within CSW01_03165at 624.431 kb on - strand, within CSW01_03165at 624.436 kb on - strand, within CSW01_03165at 624.458 kb on - strand, within CSW01_03165at 624.504 kb on + strand, within CSW01_03165at 624.548 kb on + strand, within CSW01_03165at 624.592 kb on + strand, within CSW01_03165at 624.592 kb on + strand, within CSW01_03165at 624.600 kb on - strand, within CSW01_03165at 624.600 kb on - strand, within CSW01_03165at 624.600 kb on - strand, within CSW01_03165at 624.683 kb on + strand, within CSW01_03165at 624.693 kb on + strand, within CSW01_03165at 624.693 kb on + strand, within CSW01_03165at 624.701 kb on - strand, within CSW01_03165at 624.701 kb on - strand, within CSW01_03165at 624.748 kb on - strand, within CSW01_03165at 624.750 kb on + strand, within CSW01_03165at 624.750 kb on + strand, within CSW01_03165at 624.750 kb on + strand, within CSW01_03165at 624.750 kb on + strand, within CSW01_03165at 624.750 kb on + strand, within CSW01_03165at 624.753 kb on - strand, within CSW01_03165at 624.758 kb on - strand, within CSW01_03165at 624.758 kb on - strand, within CSW01_03165at 624.759 kb on + strand, within CSW01_03165at 624.759 kb on + strand, within CSW01_03165at 624.779 kb on - strand, within CSW01_03165at 624.790 kb on - strand, within CSW01_03165at 624.790 kb on - strand, within CSW01_03165at 624.814 kb on + strandat 624.814 kb on + strandat 624.837 kb on - strandat 624.847 kb on + strandat 624.862 kb on + strandat 624.933 kb on + strandat 624.964 kb on + strandat 625.029 kb on - strandat 625.029 kb on - strandat 625.040 kb on - strandat 625.054 kb on - strandat 625.061 kb on + strandat 625.101 kb on - strandat 625.111 kb on - strandat 625.111 kb on - strandat 625.124 kb on - strandat 625.133 kb on + strandat 625.164 kb on - strandat 625.215 kb on + strandat 625.215 kb on + strandat 625.215 kb on + strandat 625.223 kb on - strandat 625.227 kb on + strandat 625.262 kb on + strandat 625.268 kb on + strandat 625.276 kb on - strandat 625.276 kb on - strandat 625.276 kb on - strandat 625.276 kb on - strandat 625.276 kb on - strandat 625.294 kb on - strand, within CSW01_03170at 625.294 kb on - strand, within CSW01_03170at 625.309 kb on - strand, within CSW01_03170at 625.349 kb on + strand, within CSW01_03170at 625.349 kb on + strand, within CSW01_03170at 625.357 kb on - strand, within CSW01_03170at 625.357 kb on - strand, within CSW01_03170at 625.381 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.391 kb on + strand, within CSW01_03170at 625.399 kb on - strand, within CSW01_03170at 625.399 kb on - strand, within CSW01_03170at 625.399 kb on - strand, within CSW01_03170at 625.399 kb on - strand, within CSW01_03170at 625.399 kb on - strand, within CSW01_03170at 625.399 kb on - strand, within CSW01_03170at 625.415 kb on + strand, within CSW01_03170at 625.423 kb on - strand, within CSW01_03170at 625.423 kb on - strand, within CSW01_03170at 625.425 kb on + strand, within CSW01_03170at 625.445 kb on - strand, within CSW01_03170at 625.445 kb on - strand, within CSW01_03170at 625.445 kb on - strand, within CSW01_03170at 625.447 kb on + strand, within CSW01_03170at 625.447 kb on + strand, within CSW01_03170at 625.447 kb on + strand, within CSW01_03170at 625.447 kb on + strand, within CSW01_03170at 625.447 kb on + strand, within CSW01_03170at 625.455 kb on - strand, within CSW01_03170at 625.455 kb on - strand, within CSW01_03170at 625.480 kb on - strand, within CSW01_03170at 625.480 kb on - strand, within CSW01_03170at 625.610 kb on - strand, within CSW01_03170at 625.610 kb on - strand, within CSW01_03170at 625.610 kb on - strand, within CSW01_03170at 625.627 kb on - strand, within CSW01_03170at 625.730 kb on - strand, within CSW01_03170at 625.759 kb on + strand, within CSW01_03170at 625.845 kb on + strand, within CSW01_03170at 625.880 kb on + strand, within CSW01_03170at 625.880 kb on + strand, within CSW01_03170at 625.900 kb on + strand, within CSW01_03170at 625.900 kb on + strand, within CSW01_03170at 625.902 kb on + strand, within CSW01_03170at 625.908 kb on - strand, within CSW01_03170at 625.908 kb on - strand, within CSW01_03170at 625.908 kb on - strand, within CSW01_03170at 625.910 kb on - strand, within CSW01_03170

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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622,646 - +0.3
622,686 + +0.6
622,686 + -0.0
622,694 - CSW01_03160 0.11 -0.8
622,737 + CSW01_03160 0.16 -0.4
622,749 + CSW01_03160 0.18 +0.4
622,803 - CSW01_03160 0.25 +0.9
622,833 + CSW01_03160 0.29 +0.2
622,833 + CSW01_03160 0.29 +0.2
622,848 + CSW01_03160 0.30 +0.4
622,856 + CSW01_03160 0.32 -0.1
622,864 - CSW01_03160 0.33 +0.4
622,891 + CSW01_03160 0.36 +0.3
622,908 + CSW01_03160 0.38 -0.5
622,945 + CSW01_03160 0.43 -0.6
622,953 - CSW01_03160 0.44 -0.3
623,010 + CSW01_03160 0.51 +0.9
623,017 + CSW01_03160 0.52 -0.3
623,018 - CSW01_03160 0.53 +0.9
623,040 - CSW01_03160 0.55 -0.3
623,040 - CSW01_03160 0.55 +0.6
623,047 + CSW01_03160 0.56 +0.8
623,088 + CSW01_03160 0.62 -0.3
623,096 - CSW01_03160 0.63 +0.2
623,127 + CSW01_03160 0.67 +0.7
623,127 + CSW01_03160 0.67 -0.2
623,127 + CSW01_03160 0.67 +0.8
623,127 + CSW01_03160 0.67 -0.4
623,127 + CSW01_03160 0.67 +0.4
623,135 - CSW01_03160 0.68 +0.8
623,143 + CSW01_03160 0.69 +0.5
623,143 + CSW01_03160 0.69 +0.7
623,194 + CSW01_03160 0.75 -0.1
623,199 + CSW01_03160 0.76 +0.7
623,199 + CSW01_03160 0.76 -0.3
623,207 - CSW01_03160 0.77 +0.3
623,231 - CSW01_03160 0.80 +0.2
623,232 + CSW01_03160 0.80 +0.5
623,241 + CSW01_03160 0.81 +0.2
623,324 + -0.6
623,362 - +0.3
623,381 + -0.5
623,451 + -0.3
623,461 + +0.3
623,461 + -0.2
623,461 + +0.1
623,461 + -0.8
623,461 + -0.4
623,461 + +1.7
623,461 + -0.0
623,469 - -0.5
623,469 - +0.0
623,469 - -0.7
623,469 - -2.0
623,469 - -0.3
623,469 - -0.6
623,469 - +0.8
623,469 - +0.8
623,469 - -0.0
623,469 - +0.0
623,484 + +1.8
623,520 + +0.4
623,664 + +0.2
623,706 - +0.1
623,716 - -0.4
623,716 - +0.5
623,716 - +0.1
623,726 - +0.6
623,732 - CSW01_03165 0.10 +0.2
623,766 + CSW01_03165 0.13 +1.2
623,766 + CSW01_03165 0.13 +1.0
623,774 - CSW01_03165 0.13 +0.3
623,791 + CSW01_03165 0.15 -1.7
623,814 + CSW01_03165 0.16 -1.5
623,814 + CSW01_03165 0.16 -0.2
623,822 - CSW01_03165 0.17 +0.5
623,822 - CSW01_03165 0.17 -0.1
623,914 + CSW01_03165 0.24 -0.2
623,914 + CSW01_03165 0.24 -1.1
623,914 + CSW01_03165 0.24 -0.2
623,922 - CSW01_03165 0.24 -0.1
623,922 - CSW01_03165 0.24 +1.4
623,938 + CSW01_03165 0.25 +0.2
623,938 + CSW01_03165 0.25 +0.8
623,938 + CSW01_03165 0.25 -0.3
623,938 + CSW01_03165 0.25 +0.9
623,938 + CSW01_03165 0.25 +0.5
623,946 - CSW01_03165 0.26 +1.2
623,946 - CSW01_03165 0.26 +1.2
623,946 - CSW01_03165 0.26 +0.6
623,946 - CSW01_03165 0.26 -0.4
623,946 - CSW01_03165 0.26 -0.1
623,970 - CSW01_03165 0.28 +0.1
623,977 - CSW01_03165 0.28 +0.6
623,985 + CSW01_03165 0.29 -0.1
623,985 + CSW01_03165 0.29 +0.2
623,985 + CSW01_03165 0.29 -0.7
623,985 + CSW01_03165 0.29 +0.2
623,993 - CSW01_03165 0.29 +3.1
623,993 - CSW01_03165 0.29 -0.2
623,993 - CSW01_03165 0.29 -1.5
623,993 - CSW01_03165 0.29 +1.1
624,032 + CSW01_03165 0.32 -0.5
624,045 + CSW01_03165 0.33 +1.0
624,112 - CSW01_03165 0.38 +0.6
624,123 + CSW01_03165 0.39 +0.8
624,154 - CSW01_03165 0.41 +0.7
624,180 + CSW01_03165 0.43 +0.8
624,202 - CSW01_03165 0.45 -0.2
624,297 + CSW01_03165 0.52 +0.3
624,305 - CSW01_03165 0.53 +0.9
624,306 + CSW01_03165 0.53 -0.7
624,306 + CSW01_03165 0.53 +0.1
624,306 + CSW01_03165 0.53 +0.7
624,314 - CSW01_03165 0.53 +0.2
624,362 + CSW01_03165 0.57 +0.4
624,370 - CSW01_03165 0.57 -0.2
624,370 - CSW01_03165 0.57 -0.5
624,380 - CSW01_03165 0.58 +0.2
624,395 + CSW01_03165 0.59 +0.2
624,397 + CSW01_03165 0.59 +0.4
624,397 + CSW01_03165 0.59 -0.2
624,397 + CSW01_03165 0.59 +0.7
624,431 - CSW01_03165 0.62 -0.3
624,436 - CSW01_03165 0.62 +0.3
624,458 - CSW01_03165 0.64 -0.1
624,504 + CSW01_03165 0.67 -0.2
624,548 + CSW01_03165 0.71 -0.9
624,592 + CSW01_03165 0.74 -0.6
624,592 + CSW01_03165 0.74 +0.4
624,600 - CSW01_03165 0.74 +0.0
624,600 - CSW01_03165 0.74 +0.1
624,600 - CSW01_03165 0.74 +0.8
624,683 + CSW01_03165 0.80 -0.5
624,693 + CSW01_03165 0.81 +0.7
624,693 + CSW01_03165 0.81 +0.4
624,701 - CSW01_03165 0.82 +0.2
624,701 - CSW01_03165 0.82 -0.6
624,748 - CSW01_03165 0.85 +0.4
624,750 + CSW01_03165 0.85 +1.2
624,750 + CSW01_03165 0.85 +0.3
624,750 + CSW01_03165 0.85 +0.1
624,750 + CSW01_03165 0.85 +0.7
624,750 + CSW01_03165 0.85 +0.1
624,753 - CSW01_03165 0.86 +0.0
624,758 - CSW01_03165 0.86 +0.3
624,758 - CSW01_03165 0.86 -0.1
624,759 + CSW01_03165 0.86 +0.8
624,759 + CSW01_03165 0.86 +0.4
624,779 - CSW01_03165 0.88 +1.1
624,790 - CSW01_03165 0.88 +0.3
624,790 - CSW01_03165 0.88 -0.0
624,814 + +0.2
624,814 + +0.2
624,837 - -0.2
624,847 + -0.4
624,862 + +0.0
624,933 + +1.3
624,964 + -0.0
625,029 - +0.4
625,029 - -0.3
625,040 - +0.1
625,054 - +1.2
625,061 + +0.4
625,101 - +0.2
625,111 - +0.0
625,111 - +0.4
625,124 - +1.0
625,133 + +0.7
625,164 - +0.4
625,215 + +0.7
625,215 + +0.2
625,215 + +0.4
625,223 - -0.2
625,227 + -0.4
625,262 + -0.3
625,268 + +0.8
625,276 - -1.3
625,276 - +1.9
625,276 - +0.4
625,276 - -0.2
625,276 - -0.4
625,294 - CSW01_03170 0.10 -0.3
625,294 - CSW01_03170 0.10 +0.5
625,309 - CSW01_03170 0.11 +0.1
625,349 + CSW01_03170 0.12 -0.4
625,349 + CSW01_03170 0.12 -0.1
625,357 - CSW01_03170 0.13 -0.2
625,357 - CSW01_03170 0.13 +0.5
625,381 + CSW01_03170 0.14 +0.4
625,391 + CSW01_03170 0.14 -0.2
625,391 + CSW01_03170 0.14 +0.5
625,391 + CSW01_03170 0.14 -0.3
625,391 + CSW01_03170 0.14 +0.7
625,391 + CSW01_03170 0.14 -0.2
625,391 + CSW01_03170 0.14 +0.1
625,391 + CSW01_03170 0.14 +0.0
625,391 + CSW01_03170 0.14 +1.1
625,391 + CSW01_03170 0.14 +0.1
625,391 + CSW01_03170 0.14 -0.2
625,391 + CSW01_03170 0.14 -0.0
625,399 - CSW01_03170 0.14 -0.0
625,399 - CSW01_03170 0.14 +0.4
625,399 - CSW01_03170 0.14 -0.3
625,399 - CSW01_03170 0.14 +0.3
625,399 - CSW01_03170 0.14 +0.0
625,399 - CSW01_03170 0.14 +0.1
625,415 + CSW01_03170 0.15 +0.5
625,423 - CSW01_03170 0.15 +1.0
625,423 - CSW01_03170 0.15 +0.8
625,425 + CSW01_03170 0.15 -0.4
625,445 - CSW01_03170 0.16 -0.0
625,445 - CSW01_03170 0.16 +0.1
625,445 - CSW01_03170 0.16 +2.1
625,447 + CSW01_03170 0.16 +0.4
625,447 + CSW01_03170 0.16 -0.2
625,447 + CSW01_03170 0.16 +0.2
625,447 + CSW01_03170 0.16 -0.2
625,447 + CSW01_03170 0.16 -0.1
625,455 - CSW01_03170 0.17 +0.3
625,455 - CSW01_03170 0.17 +0.2
625,480 - CSW01_03170 0.18 +0.4
625,480 - CSW01_03170 0.18 -0.2
625,610 - CSW01_03170 0.23 +0.4
625,610 - CSW01_03170 0.23 +0.8
625,610 - CSW01_03170 0.23 +0.3
625,627 - CSW01_03170 0.24 -0.4
625,730 - CSW01_03170 0.28 +0.5
625,759 + CSW01_03170 0.29 -1.4
625,845 + CSW01_03170 0.32 +0.7
625,880 + CSW01_03170 0.34 +0.4
625,880 + CSW01_03170 0.34 -0.1
625,900 + CSW01_03170 0.35 -0.3
625,900 + CSW01_03170 0.35 -0.3
625,902 + CSW01_03170 0.35 -0.1
625,908 - CSW01_03170 0.35 +0.2
625,908 - CSW01_03170 0.35 -0.7
625,908 - CSW01_03170 0.35 -0.1
625,910 - CSW01_03170 0.35 +0.4

Or see this region's nucleotide sequence