Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03120 and CSW01_03125 are separated by 5 nucleotides CSW01_03125 and CSW01_03130 are separated by 63 nucleotides CSW01_03130 and CSW01_03135 are separated by 10 nucleotides CSW01_03135 and CSW01_03140 are separated by 2 nucleotides
CSW01_03120: CSW01_03120 - ABC transporter ATP-binding protein, at 615,668 to 616,585
_03120
CSW01_03125: CSW01_03125 - ABC transporter permease, at 616,591 to 617,361
_03125
CSW01_03130: CSW01_03130 - pantoate--beta-alanine ligase, at 617,425 to 618,306
_03130
CSW01_03135: CSW01_03135 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 618,317 to 619,111
_03135
CSW01_03140: CSW01_03140 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 619,114 to 619,617
_03140
Position (kb) 617
618
619 Strain fitness (log2 ratio) -1
0
1
2 at 616.500 kb on + strand at 616.544 kb on - strand at 616.561 kb on + strand at 616.746 kb on + strand, within CSW01_03125 at 616.768 kb on + strand, within CSW01_03125 at 616.781 kb on - strand, within CSW01_03125 at 616.852 kb on - strand, within CSW01_03125 at 616.896 kb on - strand, within CSW01_03125 at 616.896 kb on - strand, within CSW01_03125 at 616.920 kb on - strand, within CSW01_03125 at 617.107 kb on + strand, within CSW01_03125 at 617.133 kb on + strand, within CSW01_03125 at 617.305 kb on + strand at 617.310 kb on + strand at 617.310 kb on + strand at 617.310 kb on + strand at 617.310 kb on + strand at 617.310 kb on + strand at 617.310 kb on + strand at 617.310 kb on + strand at 617.313 kb on - strand at 617.313 kb on - strand at 617.313 kb on - strand at 617.313 kb on - strand at 617.313 kb on - strand at 617.315 kb on - strand at 617.318 kb on - strand at 617.318 kb on - strand at 617.355 kb on - strand at 617.383 kb on + strand at 617.383 kb on + strand at 619.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A remove 616,500 + +0.3 616,544 - -0.8 616,561 + +0.5 616,746 + CSW01_03125 0.20 +1.3 616,768 + CSW01_03125 0.23 +0.3 616,781 - CSW01_03125 0.25 +0.5 616,852 - CSW01_03125 0.34 +1.5 616,896 - CSW01_03125 0.40 +0.2 616,896 - CSW01_03125 0.40 +0.2 616,920 - CSW01_03125 0.43 +0.3 617,107 + CSW01_03125 0.67 -0.4 617,133 + CSW01_03125 0.70 +2.0 617,305 + -0.1 617,310 + -0.2 617,310 + +0.4 617,310 + +0.8 617,310 + -0.5 617,310 + -0.5 617,310 + +0.2 617,310 + +0.1 617,313 - +1.2 617,313 - -0.0 617,313 - -0.1 617,313 - +0.7 617,313 - +1.3 617,315 - -0.8 617,318 - -0.9 617,318 - -0.6 617,355 - +0.7 617,383 + -1.0 617,383 + -0.5 619,148 - +0.1
Or see this region's nucleotide sequence