Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02420

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02415 and CSW01_02420 are separated by 110 nucleotidesCSW01_02420 and CSW01_02425 are separated by 220 nucleotides CSW01_02415: CSW01_02415 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 483,239 to 483,958 _02415 CSW01_02420: CSW01_02420 - glutaminase, at 484,069 to 484,989 _02420 CSW01_02425: CSW01_02425 - YggW family oxidoreductase, at 485,210 to 486,385 _02425 Position (kb) 484 485Strain fitness (log2 ratio) -2 -1 0 1 2at 483.109 kb on - strandat 483.109 kb on - strandat 483.131 kb on + strandat 483.131 kb on + strandat 483.145 kb on - strandat 483.166 kb on + strandat 483.173 kb on + strandat 483.181 kb on - strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.255 kb on + strandat 483.267 kb on - strandat 483.281 kb on + strandat 483.281 kb on + strandat 483.325 kb on + strand, within CSW01_02415at 483.367 kb on + strand, within CSW01_02415at 483.510 kb on + strand, within CSW01_02415at 483.515 kb on + strand, within CSW01_02415at 483.518 kb on - strand, within CSW01_02415at 483.518 kb on - strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.525 kb on + strand, within CSW01_02415at 483.526 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.533 kb on - strand, within CSW01_02415at 483.699 kb on + strand, within CSW01_02415at 483.755 kb on + strand, within CSW01_02415at 483.758 kb on + strand, within CSW01_02415at 483.763 kb on - strand, within CSW01_02415at 483.764 kb on - strand, within CSW01_02415at 483.764 kb on - strand, within CSW01_02415at 483.886 kb on + strand, within CSW01_02415at 483.886 kb on + strand, within CSW01_02415at 483.891 kb on + strandat 483.899 kb on - strandat 483.926 kb on + strandat 483.934 kb on - strandat 484.037 kb on + strandat 484.152 kb on - strandat 484.185 kb on + strand, within CSW01_02420at 484.192 kb on + strand, within CSW01_02420at 484.195 kb on - strand, within CSW01_02420at 484.199 kb on + strand, within CSW01_02420at 484.285 kb on - strand, within CSW01_02420at 484.302 kb on - strand, within CSW01_02420at 484.313 kb on - strand, within CSW01_02420at 484.323 kb on - strand, within CSW01_02420at 484.379 kb on - strand, within CSW01_02420at 484.421 kb on + strand, within CSW01_02420at 484.454 kb on + strand, within CSW01_02420at 484.455 kb on + strand, within CSW01_02420at 484.476 kb on + strand, within CSW01_02420at 484.502 kb on - strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.667 kb on + strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.675 kb on - strand, within CSW01_02420at 484.685 kb on - strand, within CSW01_02420at 484.742 kb on + strand, within CSW01_02420at 484.769 kb on - strand, within CSW01_02420at 484.807 kb on - strand, within CSW01_02420at 484.920 kb on - strandat 484.954 kb on - strandat 485.040 kb on + strandat 485.040 kb on + strandat 485.109 kb on + strandat 485.109 kb on + strandat 485.109 kb on + strandat 485.235 kb on + strandat 485.235 kb on + strandat 485.243 kb on - strandat 485.285 kb on + strandat 485.327 kb on + strandat 485.327 kb on + strandat 485.327 kb on + strandat 485.335 kb on - strand, within CSW01_02425at 485.393 kb on + strand, within CSW01_02425at 485.412 kb on - strand, within CSW01_02425at 485.489 kb on + strand, within CSW01_02425at 485.539 kb on - strand, within CSW01_02425at 485.586 kb on + strand, within CSW01_02425at 485.637 kb on - strand, within CSW01_02425at 485.671 kb on + strand, within CSW01_02425at 485.757 kb on + strand, within CSW01_02425at 485.784 kb on - strand, within CSW01_02425at 485.841 kb on + strand, within CSW01_02425at 485.952 kb on + strand, within CSW01_02425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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483,109 - +1.0
483,109 - -0.4
483,131 + +0.4
483,131 + +0.3
483,145 - +0.9
483,166 + +0.5
483,173 + +0.1
483,181 - -0.2
483,255 + +1.5
483,255 + +0.2
483,255 + -1.1
483,255 + -0.7
483,267 - -0.4
483,281 + +0.4
483,281 + +0.1
483,325 + CSW01_02415 0.12 -2.4
483,367 + CSW01_02415 0.18 +0.5
483,510 + CSW01_02415 0.38 +0.2
483,515 + CSW01_02415 0.38 +0.1
483,518 - CSW01_02415 0.39 +1.9
483,518 - CSW01_02415 0.39 +1.0
483,525 + CSW01_02415 0.40 +0.8
483,525 + CSW01_02415 0.40 -0.3
483,525 + CSW01_02415 0.40 +0.1
483,525 + CSW01_02415 0.40 +0.9
483,525 + CSW01_02415 0.40 +1.4
483,525 + CSW01_02415 0.40 +0.1
483,525 + CSW01_02415 0.40 +0.5
483,525 + CSW01_02415 0.40 +0.6
483,525 + CSW01_02415 0.40 +0.7
483,526 - CSW01_02415 0.40 +1.0
483,533 - CSW01_02415 0.41 +0.6
483,533 - CSW01_02415 0.41 +0.7
483,533 - CSW01_02415 0.41 -0.1
483,533 - CSW01_02415 0.41 +0.8
483,533 - CSW01_02415 0.41 +1.6
483,699 + CSW01_02415 0.64 -0.7
483,755 + CSW01_02415 0.72 +0.4
483,758 + CSW01_02415 0.72 +0.7
483,763 - CSW01_02415 0.73 +1.1
483,764 - CSW01_02415 0.73 -0.7
483,764 - CSW01_02415 0.73 +0.6
483,886 + CSW01_02415 0.90 -0.6
483,886 + CSW01_02415 0.90 +0.2
483,891 + +0.7
483,899 - +0.8
483,926 + +2.6
483,934 - +0.5
484,037 + -1.0
484,152 - +0.7
484,185 + CSW01_02420 0.13 +0.3
484,192 + CSW01_02420 0.13 -0.2
484,195 - CSW01_02420 0.14 +0.6
484,199 + CSW01_02420 0.14 +1.6
484,285 - CSW01_02420 0.23 +0.0
484,302 - CSW01_02420 0.25 +1.1
484,313 - CSW01_02420 0.26 -0.0
484,323 - CSW01_02420 0.28 +2.5
484,379 - CSW01_02420 0.34 -0.5
484,421 + CSW01_02420 0.38 -0.7
484,454 + CSW01_02420 0.42 +0.9
484,455 + CSW01_02420 0.42 +0.7
484,476 + CSW01_02420 0.44 +0.3
484,502 - CSW01_02420 0.47 +0.4
484,667 + CSW01_02420 0.65 -0.2
484,667 + CSW01_02420 0.65 +0.5
484,667 + CSW01_02420 0.65 -1.2
484,667 + CSW01_02420 0.65 +0.5
484,667 + CSW01_02420 0.65 +0.6
484,675 - CSW01_02420 0.66 +0.4
484,675 - CSW01_02420 0.66 -0.3
484,675 - CSW01_02420 0.66 +0.2
484,675 - CSW01_02420 0.66 +0.9
484,675 - CSW01_02420 0.66 +1.0
484,675 - CSW01_02420 0.66 +0.0
484,675 - CSW01_02420 0.66 +0.1
484,675 - CSW01_02420 0.66 -0.4
484,675 - CSW01_02420 0.66 +2.0
484,675 - CSW01_02420 0.66 +0.6
484,685 - CSW01_02420 0.67 +2.1
484,742 + CSW01_02420 0.73 -0.2
484,769 - CSW01_02420 0.76 +0.3
484,807 - CSW01_02420 0.80 +0.9
484,920 - +0.4
484,954 - +1.1
485,040 + +0.3
485,040 + -0.2
485,109 + +1.5
485,109 + -0.9
485,109 + -0.9
485,235 + +0.5
485,235 + -0.0
485,243 - -0.6
485,285 + +0.0
485,327 + -0.4
485,327 + +1.1
485,327 + -0.7
485,335 - CSW01_02425 0.11 -1.0
485,393 + CSW01_02425 0.16 +0.3
485,412 - CSW01_02425 0.17 +0.8
485,489 + CSW01_02425 0.24 +0.9
485,539 - CSW01_02425 0.28 +0.4
485,586 + CSW01_02425 0.32 -0.0
485,637 - CSW01_02425 0.36 +1.9
485,671 + CSW01_02425 0.39 +0.1
485,757 + CSW01_02425 0.47 -1.0
485,784 - CSW01_02425 0.49 +0.9
485,841 + CSW01_02425 0.54 -0.1
485,952 + CSW01_02425 0.63 -0.4

Or see this region's nucleotide sequence