Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02250

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02240 and CSW01_02245 are separated by 150 nucleotidesCSW01_02245 and CSW01_02250 are separated by 121 nucleotidesCSW01_02250 and CSW01_02255 are separated by 170 nucleotides CSW01_02240: CSW01_02240 - DUF2061 domain-containing protein, at 455,066 to 455,449 _02240 CSW01_02245: CSW01_02245 - universal stress protein, at 455,600 to 456,037 _02245 CSW01_02250: CSW01_02250 - DUF3394 domain-containing protein, at 456,159 to 458,723 _02250 CSW01_02255: CSW01_02255 - C4-dicarboxylate ABC transporter substrate-binding protein, at 458,894 to 459,880 _02255 Position (kb) 456 457 458 459Strain fitness (log2 ratio) -2 -1 0 1 2at 455.276 kb on + strand, within CSW01_02240at 455.284 kb on - strand, within CSW01_02240at 455.284 kb on - strand, within CSW01_02240at 455.328 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.335 kb on + strand, within CSW01_02240at 455.343 kb on - strand, within CSW01_02240at 455.343 kb on - strand, within CSW01_02240at 455.386 kb on + strand, within CSW01_02240at 455.425 kb on - strandat 455.459 kb on - strandat 455.603 kb on + strandat 455.603 kb on + strandat 455.667 kb on - strand, within CSW01_02245at 455.693 kb on + strand, within CSW01_02245at 455.749 kb on + strand, within CSW01_02245at 455.789 kb on + strand, within CSW01_02245at 455.834 kb on - strand, within CSW01_02245at 455.993 kb on + strand, within CSW01_02245at 456.001 kb on - strandat 456.001 kb on - strandat 456.044 kb on + strandat 456.044 kb on + strandat 456.044 kb on + strandat 456.050 kb on + strandat 456.050 kb on + strandat 456.077 kb on + strandat 456.116 kb on + strandat 456.124 kb on - strandat 456.197 kb on + strandat 456.253 kb on + strandat 456.266 kb on - strandat 456.362 kb on + strandat 456.362 kb on + strandat 456.362 kb on + strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.370 kb on - strandat 456.439 kb on - strand, within CSW01_02250at 456.441 kb on + strand, within CSW01_02250at 456.441 kb on + strand, within CSW01_02250at 456.449 kb on - strand, within CSW01_02250at 456.449 kb on - strand, within CSW01_02250at 456.474 kb on + strand, within CSW01_02250at 456.482 kb on - strand, within CSW01_02250at 456.577 kb on + strand, within CSW01_02250at 456.588 kb on + strand, within CSW01_02250at 456.597 kb on - strand, within CSW01_02250at 456.630 kb on + strand, within CSW01_02250at 456.656 kb on - strand, within CSW01_02250at 456.656 kb on - strand, within CSW01_02250at 456.656 kb on - strand, within CSW01_02250at 456.696 kb on - strand, within CSW01_02250at 456.748 kb on + strand, within CSW01_02250at 456.801 kb on + strand, within CSW01_02250at 456.809 kb on - strand, within CSW01_02250at 456.809 kb on - strand, within CSW01_02250at 456.809 kb on - strand, within CSW01_02250at 456.829 kb on + strand, within CSW01_02250at 456.875 kb on - strand, within CSW01_02250at 457.031 kb on + strand, within CSW01_02250at 457.031 kb on + strand, within CSW01_02250at 457.031 kb on + strand, within CSW01_02250at 457.031 kb on + strand, within CSW01_02250at 457.039 kb on - strand, within CSW01_02250at 457.041 kb on + strand, within CSW01_02250at 457.049 kb on - strand, within CSW01_02250at 457.128 kb on - strand, within CSW01_02250at 457.130 kb on + strand, within CSW01_02250at 457.140 kb on + strand, within CSW01_02250at 457.140 kb on + strand, within CSW01_02250at 457.251 kb on + strand, within CSW01_02250at 457.251 kb on + strand, within CSW01_02250at 457.361 kb on + strand, within CSW01_02250at 457.541 kb on - strand, within CSW01_02250at 457.562 kb on - strand, within CSW01_02250at 457.607 kb on + strand, within CSW01_02250at 457.674 kb on + strand, within CSW01_02250at 457.703 kb on + strand, within CSW01_02250at 457.717 kb on + strand, within CSW01_02250at 457.725 kb on - strand, within CSW01_02250at 457.725 kb on - strand, within CSW01_02250at 457.770 kb on - strand, within CSW01_02250at 457.842 kb on - strand, within CSW01_02250at 457.851 kb on + strand, within CSW01_02250at 457.888 kb on - strand, within CSW01_02250at 457.936 kb on - strand, within CSW01_02250at 457.979 kb on + strand, within CSW01_02250at 457.979 kb on + strand, within CSW01_02250at 457.987 kb on - strand, within CSW01_02250at 458.280 kb on + strand, within CSW01_02250at 458.307 kb on + strand, within CSW01_02250at 458.307 kb on + strand, within CSW01_02250at 458.307 kb on + strand, within CSW01_02250at 458.315 kb on - strand, within CSW01_02250at 458.315 kb on - strand, within CSW01_02250at 458.332 kb on - strand, within CSW01_02250at 458.332 kb on - strand, within CSW01_02250at 458.335 kb on - strand, within CSW01_02250at 458.356 kb on - strand, within CSW01_02250at 458.376 kb on - strand, within CSW01_02250at 458.380 kb on + strand, within CSW01_02250at 458.388 kb on - strand, within CSW01_02250at 458.394 kb on + strand, within CSW01_02250at 458.394 kb on + strand, within CSW01_02250at 458.394 kb on + strand, within CSW01_02250at 458.447 kb on + strand, within CSW01_02250at 458.455 kb on - strand, within CSW01_02250at 458.524 kb on + strandat 458.557 kb on - strandat 458.562 kb on + strandat 458.573 kb on + strandat 458.573 kb on + strandat 458.600 kb on + strandat 458.610 kb on + strandat 458.615 kb on + strandat 458.620 kb on + strandat 458.620 kb on + strandat 458.634 kb on + strandat 458.665 kb on + strandat 458.693 kb on - strandat 458.693 kb on - strandat 458.703 kb on + strandat 458.705 kb on + strandat 458.707 kb on + strandat 458.726 kb on + strandat 458.726 kb on + strandat 458.726 kb on + strandat 458.734 kb on - strandat 458.734 kb on - strandat 458.822 kb on - strandat 458.972 kb on - strandat 459.008 kb on - strand, within CSW01_02255at 459.010 kb on + strand, within CSW01_02255at 459.010 kb on + strand, within CSW01_02255at 459.111 kb on - strand, within CSW01_02255at 459.118 kb on - strand, within CSW01_02255at 459.129 kb on + strand, within CSW01_02255at 459.145 kb on - strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.151 kb on + strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.159 kb on - strand, within CSW01_02255at 459.168 kb on + strand, within CSW01_02255at 459.168 kb on + strand, within CSW01_02255at 459.240 kb on - strand, within CSW01_02255at 459.333 kb on - strand, within CSW01_02255at 459.352 kb on + strand, within CSW01_02255at 459.360 kb on - strand, within CSW01_02255at 459.360 kb on - strand, within CSW01_02255at 459.455 kb on + strand, within CSW01_02255at 459.535 kb on + strand, within CSW01_02255at 459.550 kb on - strand, within CSW01_02255at 459.580 kb on + strand, within CSW01_02255at 459.667 kb on - strand, within CSW01_02255

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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455,276 + CSW01_02240 0.55 +0.7
455,284 - CSW01_02240 0.57 +0.4
455,284 - CSW01_02240 0.57 +0.1
455,328 + CSW01_02240 0.68 +0.2
455,335 + CSW01_02240 0.70 +0.4
455,335 + CSW01_02240 0.70 +0.8
455,335 + CSW01_02240 0.70 +0.8
455,335 + CSW01_02240 0.70 -0.1
455,343 - CSW01_02240 0.72 +0.1
455,343 - CSW01_02240 0.72 +1.5
455,386 + CSW01_02240 0.83 +0.5
455,425 - -0.1
455,459 - -0.2
455,603 + -0.3
455,603 + -0.9
455,667 - CSW01_02245 0.15 +0.7
455,693 + CSW01_02245 0.21 +0.5
455,749 + CSW01_02245 0.34 +0.3
455,789 + CSW01_02245 0.43 +0.2
455,834 - CSW01_02245 0.53 -0.1
455,993 + CSW01_02245 0.90 -0.5
456,001 - +0.6
456,001 - +0.3
456,044 + +0.1
456,044 + -1.2
456,044 + -0.2
456,050 + -0.7
456,050 + +0.6
456,077 + +0.7
456,116 + +0.0
456,124 - +0.2
456,197 + +0.2
456,253 + -0.7
456,266 - +1.0
456,362 + +0.3
456,362 + +0.9
456,362 + -0.2
456,370 - +1.5
456,370 - -0.0
456,370 - +1.2
456,370 - -0.4
456,370 - +2.0
456,370 - +0.1
456,439 - CSW01_02250 0.11 +1.8
456,441 + CSW01_02250 0.11 +0.9
456,441 + CSW01_02250 0.11 +0.6
456,449 - CSW01_02250 0.11 +0.2
456,449 - CSW01_02250 0.11 -0.0
456,474 + CSW01_02250 0.12 +0.0
456,482 - CSW01_02250 0.13 -0.8
456,577 + CSW01_02250 0.16 +0.2
456,588 + CSW01_02250 0.17 +0.7
456,597 - CSW01_02250 0.17 +0.1
456,630 + CSW01_02250 0.18 +0.5
456,656 - CSW01_02250 0.19 +0.1
456,656 - CSW01_02250 0.19 +1.0
456,656 - CSW01_02250 0.19 +0.6
456,696 - CSW01_02250 0.21 +0.8
456,748 + CSW01_02250 0.23 +0.5
456,801 + CSW01_02250 0.25 -0.1
456,809 - CSW01_02250 0.25 -0.0
456,809 - CSW01_02250 0.25 -0.8
456,809 - CSW01_02250 0.25 -0.5
456,829 + CSW01_02250 0.26 +0.2
456,875 - CSW01_02250 0.28 +0.5
457,031 + CSW01_02250 0.34 +1.1
457,031 + CSW01_02250 0.34 -0.6
457,031 + CSW01_02250 0.34 +1.2
457,031 + CSW01_02250 0.34 -1.4
457,039 - CSW01_02250 0.34 +0.9
457,041 + CSW01_02250 0.34 +0.4
457,049 - CSW01_02250 0.35 +0.4
457,128 - CSW01_02250 0.38 +0.2
457,130 + CSW01_02250 0.38 +0.4
457,140 + CSW01_02250 0.38 +0.9
457,140 + CSW01_02250 0.38 +0.7
457,251 + CSW01_02250 0.43 +1.0
457,251 + CSW01_02250 0.43 +0.5
457,361 + CSW01_02250 0.47 +0.7
457,541 - CSW01_02250 0.54 +1.3
457,562 - CSW01_02250 0.55 +0.4
457,607 + CSW01_02250 0.56 +0.1
457,674 + CSW01_02250 0.59 +0.1
457,703 + CSW01_02250 0.60 -0.0
457,717 + CSW01_02250 0.61 +0.7
457,725 - CSW01_02250 0.61 -2.7
457,725 - CSW01_02250 0.61 +0.0
457,770 - CSW01_02250 0.63 +0.5
457,842 - CSW01_02250 0.66 -1.5
457,851 + CSW01_02250 0.66 -0.4
457,888 - CSW01_02250 0.67 -1.2
457,936 - CSW01_02250 0.69 +1.1
457,979 + CSW01_02250 0.71 +0.2
457,979 + CSW01_02250 0.71 -0.6
457,987 - CSW01_02250 0.71 -0.7
458,280 + CSW01_02250 0.83 +0.9
458,307 + CSW01_02250 0.84 +0.6
458,307 + CSW01_02250 0.84 +0.3
458,307 + CSW01_02250 0.84 +0.0
458,315 - CSW01_02250 0.84 -0.0
458,315 - CSW01_02250 0.84 +0.5
458,332 - CSW01_02250 0.85 +0.1
458,332 - CSW01_02250 0.85 +0.4
458,335 - CSW01_02250 0.85 +0.3
458,356 - CSW01_02250 0.86 -0.2
458,376 - CSW01_02250 0.86 +1.7
458,380 + CSW01_02250 0.87 +0.3
458,388 - CSW01_02250 0.87 +0.2
458,394 + CSW01_02250 0.87 +0.5
458,394 + CSW01_02250 0.87 -0.1
458,394 + CSW01_02250 0.87 +0.7
458,447 + CSW01_02250 0.89 +0.6
458,455 - CSW01_02250 0.90 +1.0
458,524 + +1.9
458,557 - +0.5
458,562 + +0.3
458,573 + -0.1
458,573 + +0.2
458,600 + -0.3
458,610 + +2.0
458,615 + +1.1
458,620 + +0.7
458,620 + +1.1
458,634 + +0.1
458,665 + +0.1
458,693 - +0.4
458,693 - +0.2
458,703 + -0.9
458,705 + +0.4
458,707 + -0.1
458,726 + +0.1
458,726 + +0.7
458,726 + +0.4
458,734 - +0.4
458,734 - +0.5
458,822 - +0.1
458,972 - +0.1
459,008 - CSW01_02255 0.12 +0.9
459,010 + CSW01_02255 0.12 +0.2
459,010 + CSW01_02255 0.12 +0.9
459,111 - CSW01_02255 0.22 +0.7
459,118 - CSW01_02255 0.23 +2.5
459,129 + CSW01_02255 0.24 +0.7
459,145 - CSW01_02255 0.25 -0.0
459,151 + CSW01_02255 0.26 +0.0
459,151 + CSW01_02255 0.26 +0.1
459,151 + CSW01_02255 0.26 +0.2
459,151 + CSW01_02255 0.26 +0.3
459,159 - CSW01_02255 0.27 +0.4
459,159 - CSW01_02255 0.27 +0.1
459,159 - CSW01_02255 0.27 -1.2
459,159 - CSW01_02255 0.27 +0.2
459,159 - CSW01_02255 0.27 +0.7
459,159 - CSW01_02255 0.27 -0.3
459,168 + CSW01_02255 0.28 +0.6
459,168 + CSW01_02255 0.28 -0.6
459,240 - CSW01_02255 0.35 +0.4
459,333 - CSW01_02255 0.44 -0.3
459,352 + CSW01_02255 0.46 +0.9
459,360 - CSW01_02255 0.47 +0.3
459,360 - CSW01_02255 0.47 -0.1
459,455 + CSW01_02255 0.57 +1.5
459,535 + CSW01_02255 0.65 +0.9
459,550 - CSW01_02255 0.66 -1.6
459,580 + CSW01_02255 0.70 +0.1
459,667 - CSW01_02255 0.78 -1.2

Or see this region's nucleotide sequence