Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02090

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02085 and CSW01_02090 are separated by 169 nucleotidesCSW01_02090 and CSW01_02095 are separated by 291 nucleotidesCSW01_02095 and CSW01_02100 are separated by 114 nucleotides CSW01_02085: CSW01_02085 - UTP--glucose-1-phosphate uridylyltransferase, at 419,374 to 420,249 _02085 CSW01_02090: CSW01_02090 - helix-turn-helix transcriptional regulator, at 420,419 to 421,063 _02090 CSW01_02095: CSW01_02095 - ssDNA-binding protein, at 421,355 to 421,888 _02095 CSW01_02100: CSW01_02100 - RNase E specificity factor CsrD, at 422,003 to 424,024 _02100 Position (kb) 420 421 422Strain fitness (log2 ratio) -2 -1 0 1 2 3at 419.472 kb on - strand, within CSW01_02085at 419.478 kb on - strand, within CSW01_02085at 419.502 kb on - strand, within CSW01_02085at 419.528 kb on - strand, within CSW01_02085at 419.540 kb on + strand, within CSW01_02085at 419.653 kb on + strand, within CSW01_02085at 419.653 kb on + strand, within CSW01_02085at 419.671 kb on - strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.806 kb on - strand, within CSW01_02085at 419.808 kb on + strand, within CSW01_02085at 419.808 kb on + strand, within CSW01_02085at 419.868 kb on - strand, within CSW01_02085at 419.905 kb on + strand, within CSW01_02085at 419.927 kb on - strand, within CSW01_02085at 419.928 kb on - strand, within CSW01_02085at 420.032 kb on + strand, within CSW01_02085at 420.109 kb on + strand, within CSW01_02085at 420.128 kb on + strand, within CSW01_02085at 420.169 kb on - strandat 420.259 kb on + strandat 420.289 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.321 kb on - strandat 420.401 kb on + strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.414 kb on - strandat 420.416 kb on - strandat 420.438 kb on + strandat 420.438 kb on + strandat 420.619 kb on + strand, within CSW01_02090at 420.642 kb on + strand, within CSW01_02090at 420.644 kb on - strand, within CSW01_02090at 420.694 kb on - strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.734 kb on + strand, within CSW01_02090at 420.743 kb on + strand, within CSW01_02090at 420.744 kb on + strand, within CSW01_02090at 420.752 kb on - strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.766 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.853 kb on - strand, within CSW01_02090at 420.932 kb on + strand, within CSW01_02090at 420.945 kb on + strand, within CSW01_02090at 420.976 kb on + strand, within CSW01_02090at 421.016 kb on - strandat 421.144 kb on + strandat 421.157 kb on + strandat 421.165 kb on - strandat 421.269 kb on - strandat 421.269 kb on - strandat 421.953 kb on + strandat 421.961 kb on + strandat 421.964 kb on - strandat 421.993 kb on + strandat 422.001 kb on - strandat 422.002 kb on - strandat 422.006 kb on + strandat 422.016 kb on + strandat 422.017 kb on + strandat 422.024 kb on - strandat 422.024 kb on - strandat 422.028 kb on + strandat 422.028 kb on + strandat 422.028 kb on + strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strandat 422.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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419,472 - CSW01_02085 0.11 +1.1
419,478 - CSW01_02085 0.12 +0.9
419,502 - CSW01_02085 0.15 -1.4
419,528 - CSW01_02085 0.18 +0.1
419,540 + CSW01_02085 0.19 -0.4
419,653 + CSW01_02085 0.32 -0.1
419,653 + CSW01_02085 0.32 -0.5
419,671 - CSW01_02085 0.34 -1.1
419,767 + CSW01_02085 0.45 -0.3
419,767 + CSW01_02085 0.45 -1.1
419,767 + CSW01_02085 0.45 +1.1
419,767 + CSW01_02085 0.45 -0.3
419,767 + CSW01_02085 0.45 +2.2
419,767 + CSW01_02085 0.45 +0.1
419,767 + CSW01_02085 0.45 +0.9
419,767 + CSW01_02085 0.45 +2.2
419,775 - CSW01_02085 0.46 +0.1
419,775 - CSW01_02085 0.46 -0.7
419,775 - CSW01_02085 0.46 +1.5
419,775 - CSW01_02085 0.46 +0.9
419,775 - CSW01_02085 0.46 +0.9
419,775 - CSW01_02085 0.46 +1.2
419,806 - CSW01_02085 0.49 +0.4
419,808 + CSW01_02085 0.50 -0.5
419,808 + CSW01_02085 0.50 +1.1
419,868 - CSW01_02085 0.56 -1.4
419,905 + CSW01_02085 0.61 -0.7
419,927 - CSW01_02085 0.63 -2.1
419,928 - CSW01_02085 0.63 +0.7
420,032 + CSW01_02085 0.75 -0.4
420,109 + CSW01_02085 0.84 +1.2
420,128 + CSW01_02085 0.86 +1.9
420,169 - -0.5
420,259 + +0.4
420,289 + +0.9
420,313 + +0.2
420,313 + +0.3
420,313 + +0.3
420,313 + -0.4
420,313 + -0.5
420,321 - +0.2
420,401 + -0.1
420,409 - +0.5
420,409 - +0.5
420,409 - +1.1
420,414 - +0.3
420,416 - -0.2
420,438 + +0.9
420,438 + +0.1
420,619 + CSW01_02090 0.31 -0.2
420,642 + CSW01_02090 0.35 +0.6
420,644 - CSW01_02090 0.35 +0.3
420,694 - CSW01_02090 0.43 -0.3
420,706 + CSW01_02090 0.44 +0.2
420,706 + CSW01_02090 0.44 -0.9
420,706 + CSW01_02090 0.44 +2.2
420,706 + CSW01_02090 0.44 +1.3
420,706 + CSW01_02090 0.44 +0.8
420,706 + CSW01_02090 0.44 +0.6
420,706 + CSW01_02090 0.44 -1.4
420,706 + CSW01_02090 0.44 +0.8
420,714 - CSW01_02090 0.46 -0.1
420,714 - CSW01_02090 0.46 +0.4
420,714 - CSW01_02090 0.46 +0.8
420,714 - CSW01_02090 0.46 +1.2
420,714 - CSW01_02090 0.46 +1.2
420,714 - CSW01_02090 0.46 +1.9
420,714 - CSW01_02090 0.46 +0.7
420,714 - CSW01_02090 0.46 -0.7
420,734 + CSW01_02090 0.49 +1.3
420,743 + CSW01_02090 0.50 -0.1
420,744 + CSW01_02090 0.50 +0.4
420,752 - CSW01_02090 0.52 +0.4
420,756 + CSW01_02090 0.52 -0.1
420,756 + CSW01_02090 0.52 +1.6
420,764 - CSW01_02090 0.53 +0.1
420,764 - CSW01_02090 0.53 +1.5
420,764 - CSW01_02090 0.53 +2.9
420,764 - CSW01_02090 0.53 -0.1
420,766 + CSW01_02090 0.54 +0.7
420,844 + CSW01_02090 0.66 +0.8
420,844 + CSW01_02090 0.66 +0.9
420,844 + CSW01_02090 0.66 -0.2
420,852 - CSW01_02090 0.67 -0.4
420,852 - CSW01_02090 0.67 -0.7
420,852 - CSW01_02090 0.67 +0.7
420,852 - CSW01_02090 0.67 +0.5
420,852 - CSW01_02090 0.67 +0.5
420,852 - CSW01_02090 0.67 +0.4
420,853 - CSW01_02090 0.67 +2.3
420,932 + CSW01_02090 0.80 +0.6
420,945 + CSW01_02090 0.82 +0.5
420,976 + CSW01_02090 0.86 +0.2
421,016 - -0.1
421,144 + +0.4
421,157 + +0.6
421,165 - -0.6
421,269 - +0.2
421,269 - +0.6
421,953 + -0.0
421,961 + +0.9
421,964 - -0.0
421,993 + +0.4
422,001 - -0.5
422,002 - +0.2
422,006 + +0.5
422,016 + +0.0
422,017 + +1.0
422,024 - +1.3
422,024 - -0.0
422,028 + +0.1
422,028 + +1.2
422,028 + +0.5
422,036 - +0.1
422,036 - +1.3
422,036 - +0.9
422,036 - +0.9
422,036 - -0.4

Or see this region's nucleotide sequence