Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01905

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01895 and CSW01_01900 are separated by 115 nucleotidesCSW01_01900 and CSW01_01905 are separated by 75 nucleotidesCSW01_01905 and CSW01_01910 are separated by 122 nucleotides CSW01_01895: CSW01_01895 - 30S ribosomal protein S12, at 377,246 to 377,620 _01895 CSW01_01900: CSW01_01900 - 30S ribosomal protein S7, at 377,736 to 378,206 _01900 CSW01_01905: CSW01_01905 - elongation factor G, at 378,282 to 380,378 _01905 CSW01_01910: CSW01_01910 - elongation factor Tu, at 380,501 to 381,685 _01910 Position (kb) 378 379 380 381Strain fitness (log2 ratio) -1 0 1at 377.598 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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377,598 + -0.9

Or see this region's nucleotide sequence