Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01750

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01745 and CSW01_01750 are separated by 97 nucleotidesCSW01_01750 and CSW01_01755 are separated by 186 nucleotides CSW01_01745: CSW01_01745 - EamA family transporter, at 355,099 to 356,040 _01745 CSW01_01750: CSW01_01750 - transporter, at 356,138 to 357,574 _01750 CSW01_01755: CSW01_01755 - phosphatidylserine decarboxylase proenzyme, at 357,761 to 358,618 _01755 Position (kb) 356 357 358Strain fitness (log2 ratio) -2 -1 0 1 2at 355.142 kb on - strandat 355.142 kb on - strandat 355.166 kb on - strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.170 kb on + strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.178 kb on - strandat 355.180 kb on + strandat 355.183 kb on - strandat 355.220 kb on - strand, within CSW01_01745at 355.225 kb on - strand, within CSW01_01745at 355.227 kb on + strand, within CSW01_01745at 355.247 kb on + strand, within CSW01_01745at 355.259 kb on - strand, within CSW01_01745at 355.267 kb on - strand, within CSW01_01745at 355.267 kb on - strand, within CSW01_01745at 355.280 kb on - strand, within CSW01_01745at 355.280 kb on - strand, within CSW01_01745at 355.339 kb on + strand, within CSW01_01745at 355.370 kb on + strand, within CSW01_01745at 355.380 kb on + strand, within CSW01_01745at 355.493 kb on - strand, within CSW01_01745at 355.509 kb on + strand, within CSW01_01745at 355.537 kb on - strand, within CSW01_01745at 355.551 kb on - strand, within CSW01_01745at 355.626 kb on + strand, within CSW01_01745at 355.634 kb on - strand, within CSW01_01745at 355.637 kb on + strand, within CSW01_01745at 355.656 kb on + strand, within CSW01_01745at 355.661 kb on + strand, within CSW01_01745at 355.683 kb on + strand, within CSW01_01745at 355.686 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.713 kb on + strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.721 kb on - strand, within CSW01_01745at 355.722 kb on - strand, within CSW01_01745at 355.786 kb on + strand, within CSW01_01745at 355.800 kb on - strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.807 kb on + strand, within CSW01_01745at 355.810 kb on + strand, within CSW01_01745at 355.810 kb on + strand, within CSW01_01745at 355.810 kb on + strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.815 kb on - strand, within CSW01_01745at 355.819 kb on + strand, within CSW01_01745at 355.827 kb on - strand, within CSW01_01745at 355.829 kb on + strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.837 kb on - strand, within CSW01_01745at 355.839 kb on + strand, within CSW01_01745at 355.842 kb on - strand, within CSW01_01745at 355.847 kb on - strand, within CSW01_01745at 355.864 kb on + strand, within CSW01_01745at 355.870 kb on - strand, within CSW01_01745at 355.872 kb on - strand, within CSW01_01745at 355.872 kb on - strand, within CSW01_01745at 355.885 kb on - strand, within CSW01_01745at 355.944 kb on + strand, within CSW01_01745at 355.944 kb on + strand, within CSW01_01745at 355.952 kb on - strandat 355.965 kb on + strandat 355.975 kb on + strandat 355.983 kb on - strandat 356.014 kb on - strandat 356.017 kb on - strandat 356.038 kb on - strandat 356.077 kb on + strandat 356.077 kb on + strandat 356.085 kb on - strandat 356.085 kb on - strandat 356.085 kb on - strandat 356.085 kb on - strandat 356.121 kb on - strandat 356.122 kb on + strandat 356.192 kb on + strandat 356.233 kb on - strandat 356.268 kb on - strandat 356.268 kb on - strandat 356.338 kb on + strand, within CSW01_01750at 356.338 kb on + strand, within CSW01_01750at 356.343 kb on + strand, within CSW01_01750at 356.343 kb on + strand, within CSW01_01750at 356.346 kb on - strand, within CSW01_01750at 356.346 kb on - strand, within CSW01_01750at 356.415 kb on + strand, within CSW01_01750at 356.430 kb on - strand, within CSW01_01750at 356.461 kb on + strand, within CSW01_01750at 356.461 kb on + strand, within CSW01_01750at 356.469 kb on - strand, within CSW01_01750at 356.474 kb on - strand, within CSW01_01750at 356.501 kb on + strand, within CSW01_01750at 356.503 kb on - strand, within CSW01_01750at 356.503 kb on - strand, within CSW01_01750at 356.511 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.521 kb on + strand, within CSW01_01750at 356.529 kb on - strand, within CSW01_01750at 356.529 kb on - strand, within CSW01_01750at 356.529 kb on - strand, within CSW01_01750at 356.529 kb on - strand, within CSW01_01750at 356.562 kb on - strand, within CSW01_01750at 356.569 kb on + strand, within CSW01_01750at 356.569 kb on - strand, within CSW01_01750at 356.569 kb on - strand, within CSW01_01750at 356.569 kb on - strand, within CSW01_01750at 356.625 kb on - strand, within CSW01_01750at 356.655 kb on - strand, within CSW01_01750at 356.657 kb on + strand, within CSW01_01750at 356.657 kb on + strand, within CSW01_01750at 356.668 kb on + strand, within CSW01_01750at 356.689 kb on + strand, within CSW01_01750at 356.689 kb on + strand, within CSW01_01750at 356.704 kb on - strand, within CSW01_01750at 356.712 kb on + strand, within CSW01_01750at 356.720 kb on - strand, within CSW01_01750at 356.730 kb on - strand, within CSW01_01750at 356.776 kb on + strand, within CSW01_01750at 356.784 kb on - strand, within CSW01_01750at 356.879 kb on + strand, within CSW01_01750at 356.912 kb on - strand, within CSW01_01750at 356.918 kb on - strand, within CSW01_01750at 356.944 kb on + strand, within CSW01_01750at 356.957 kb on - strand, within CSW01_01750at 356.983 kb on - strand, within CSW01_01750at 356.998 kb on - strand, within CSW01_01750at 357.014 kb on + strand, within CSW01_01750at 357.032 kb on - strand, within CSW01_01750at 357.043 kb on + strand, within CSW01_01750at 357.060 kb on + strand, within CSW01_01750at 357.068 kb on - strand, within CSW01_01750at 357.068 kb on - strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.097 kb on + strand, within CSW01_01750at 357.098 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.105 kb on - strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.301 kb on + strand, within CSW01_01750at 357.309 kb on - strand, within CSW01_01750at 357.309 kb on - strand, within CSW01_01750at 357.311 kb on + strand, within CSW01_01750at 357.338 kb on - strand, within CSW01_01750at 357.338 kb on - strand, within CSW01_01750at 357.348 kb on - strand, within CSW01_01750at 357.393 kb on + strand, within CSW01_01750at 357.393 kb on + strand, within CSW01_01750at 357.393 kb on + strand, within CSW01_01750at 357.401 kb on - strand, within CSW01_01750at 357.442 kb on - strandat 357.500 kb on - strandat 357.537 kb on + strandat 357.582 kb on - strandat 357.582 kb on - strandat 357.582 kb on - strandat 357.586 kb on + strandat 357.619 kb on - strandat 357.643 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.653 kb on + strandat 357.661 kb on - strandat 357.661 kb on - strandat 357.718 kb on + strandat 357.728 kb on + strandat 357.746 kb on + strandat 357.754 kb on - strandat 357.756 kb on - strandat 357.772 kb on - strandat 357.772 kb on - strandat 357.774 kb on + strandat 357.774 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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355,142 - +1.0
355,142 - -1.2
355,166 - +1.5
355,170 + +0.7
355,170 + +0.8
355,170 + +0.0
355,170 + -0.6
355,170 + -0.9
355,170 + -0.0
355,170 + -0.0
355,170 + +0.4
355,178 - +0.4
355,178 - -0.3
355,178 - +0.0
355,178 - -1.4
355,178 - +0.6
355,180 + -0.7
355,183 - +2.0
355,220 - CSW01_01745 0.13 +0.8
355,225 - CSW01_01745 0.13 +0.2
355,227 + CSW01_01745 0.14 +0.3
355,247 + CSW01_01745 0.16 +0.9
355,259 - CSW01_01745 0.17 +1.2
355,267 - CSW01_01745 0.18 -0.3
355,267 - CSW01_01745 0.18 -0.8
355,280 - CSW01_01745 0.19 +0.4
355,280 - CSW01_01745 0.19 -0.2
355,339 + CSW01_01745 0.25 +0.2
355,370 + CSW01_01745 0.29 +0.2
355,380 + CSW01_01745 0.30 -0.1
355,493 - CSW01_01745 0.42 +1.0
355,509 + CSW01_01745 0.44 +1.1
355,537 - CSW01_01745 0.46 -0.3
355,551 - CSW01_01745 0.48 +1.2
355,626 + CSW01_01745 0.56 -0.1
355,634 - CSW01_01745 0.57 +0.5
355,637 + CSW01_01745 0.57 -0.0
355,656 + CSW01_01745 0.59 -0.4
355,661 + CSW01_01745 0.60 -0.3
355,683 + CSW01_01745 0.62 +1.3
355,686 + CSW01_01745 0.62 +1.3
355,713 + CSW01_01745 0.65 +0.4
355,713 + CSW01_01745 0.65 +0.3
355,713 + CSW01_01745 0.65 +0.7
355,713 + CSW01_01745 0.65 +0.5
355,713 + CSW01_01745 0.65 +1.0
355,713 + CSW01_01745 0.65 -0.2
355,713 + CSW01_01745 0.65 +1.2
355,713 + CSW01_01745 0.65 +0.2
355,713 + CSW01_01745 0.65 +1.1
355,713 + CSW01_01745 0.65 -0.2
355,721 - CSW01_01745 0.66 +0.8
355,721 - CSW01_01745 0.66 +0.1
355,721 - CSW01_01745 0.66 -1.1
355,721 - CSW01_01745 0.66 +2.5
355,721 - CSW01_01745 0.66 -0.0
355,721 - CSW01_01745 0.66 +1.0
355,721 - CSW01_01745 0.66 -2.6
355,721 - CSW01_01745 0.66 +1.0
355,721 - CSW01_01745 0.66 +0.4
355,721 - CSW01_01745 0.66 +0.5
355,721 - CSW01_01745 0.66 -0.1
355,721 - CSW01_01745 0.66 +1.3
355,721 - CSW01_01745 0.66 +0.5
355,721 - CSW01_01745 0.66 -1.1
355,721 - CSW01_01745 0.66 +0.6
355,721 - CSW01_01745 0.66 +0.2
355,722 - CSW01_01745 0.66 +0.3
355,786 + CSW01_01745 0.73 -0.0
355,800 - CSW01_01745 0.74 +1.0
355,807 + CSW01_01745 0.75 -0.4
355,807 + CSW01_01745 0.75 +1.2
355,807 + CSW01_01745 0.75 +0.5
355,807 + CSW01_01745 0.75 -0.1
355,810 + CSW01_01745 0.75 +1.0
355,810 + CSW01_01745 0.75 +1.0
355,810 + CSW01_01745 0.75 +0.1
355,815 - CSW01_01745 0.76 +2.0
355,815 - CSW01_01745 0.76 +0.5
355,815 - CSW01_01745 0.76 -0.7
355,815 - CSW01_01745 0.76 +0.5
355,815 - CSW01_01745 0.76 +0.7
355,819 + CSW01_01745 0.76 +0.4
355,827 - CSW01_01745 0.77 -0.2
355,829 + CSW01_01745 0.77 +0.3
355,837 - CSW01_01745 0.78 +0.0
355,837 - CSW01_01745 0.78 +0.8
355,837 - CSW01_01745 0.78 +0.3
355,837 - CSW01_01745 0.78 +0.3
355,839 + CSW01_01745 0.79 -0.5
355,842 - CSW01_01745 0.79 -0.2
355,847 - CSW01_01745 0.79 +1.0
355,864 + CSW01_01745 0.81 -1.2
355,870 - CSW01_01745 0.82 +0.4
355,872 - CSW01_01745 0.82 +1.5
355,872 - CSW01_01745 0.82 +0.3
355,885 - CSW01_01745 0.83 +1.8
355,944 + CSW01_01745 0.90 +2.3
355,944 + CSW01_01745 0.90 +0.6
355,952 - +0.2
355,965 + -0.6
355,975 + +0.5
355,983 - +0.5
356,014 - +0.6
356,017 - +0.4
356,038 - +0.0
356,077 + +0.4
356,077 + +0.3
356,085 - -0.0
356,085 - +0.3
356,085 - -0.2
356,085 - -0.6
356,121 - +0.1
356,122 + -0.1
356,192 + +1.2
356,233 - -0.2
356,268 - +0.1
356,268 - -0.1
356,338 + CSW01_01750 0.14 +0.1
356,338 + CSW01_01750 0.14 +1.6
356,343 + CSW01_01750 0.14 +0.3
356,343 + CSW01_01750 0.14 +1.3
356,346 - CSW01_01750 0.14 -0.3
356,346 - CSW01_01750 0.14 +0.6
356,415 + CSW01_01750 0.19 +0.2
356,430 - CSW01_01750 0.20 -0.8
356,461 + CSW01_01750 0.22 -0.5
356,461 + CSW01_01750 0.22 +0.4
356,469 - CSW01_01750 0.23 +0.3
356,474 - CSW01_01750 0.23 +0.8
356,501 + CSW01_01750 0.25 +0.1
356,503 - CSW01_01750 0.25 +0.7
356,503 - CSW01_01750 0.25 +0.0
356,511 + CSW01_01750 0.26 -0.3
356,521 + CSW01_01750 0.27 +0.6
356,521 + CSW01_01750 0.27 +0.8
356,521 + CSW01_01750 0.27 -0.0
356,521 + CSW01_01750 0.27 +1.0
356,521 + CSW01_01750 0.27 +1.0
356,521 + CSW01_01750 0.27 +1.7
356,521 + CSW01_01750 0.27 +0.4
356,521 + CSW01_01750 0.27 +0.7
356,521 + CSW01_01750 0.27 -1.0
356,521 + CSW01_01750 0.27 +1.4
356,521 + CSW01_01750 0.27 -0.1
356,529 - CSW01_01750 0.27 +1.5
356,529 - CSW01_01750 0.27 +1.0
356,529 - CSW01_01750 0.27 -0.3
356,529 - CSW01_01750 0.27 +2.1
356,562 - CSW01_01750 0.30 +0.8
356,569 + CSW01_01750 0.30 +1.8
356,569 - CSW01_01750 0.30 +1.2
356,569 - CSW01_01750 0.30 +2.2
356,569 - CSW01_01750 0.30 +0.5
356,625 - CSW01_01750 0.34 +0.9
356,655 - CSW01_01750 0.36 +1.1
356,657 + CSW01_01750 0.36 +0.4
356,657 + CSW01_01750 0.36 +0.8
356,668 + CSW01_01750 0.37 +0.3
356,689 + CSW01_01750 0.38 -0.7
356,689 + CSW01_01750 0.38 -0.3
356,704 - CSW01_01750 0.39 +1.5
356,712 + CSW01_01750 0.40 +0.6
356,720 - CSW01_01750 0.41 +0.7
356,730 - CSW01_01750 0.41 -0.0
356,776 + CSW01_01750 0.44 +0.1
356,784 - CSW01_01750 0.45 +0.2
356,879 + CSW01_01750 0.52 -0.3
356,912 - CSW01_01750 0.54 +0.5
356,918 - CSW01_01750 0.54 +0.3
356,944 + CSW01_01750 0.56 +1.2
356,957 - CSW01_01750 0.57 +0.4
356,983 - CSW01_01750 0.59 -0.4
356,998 - CSW01_01750 0.60 +0.2
357,014 + CSW01_01750 0.61 +0.5
357,032 - CSW01_01750 0.62 +1.0
357,043 + CSW01_01750 0.63 +0.7
357,060 + CSW01_01750 0.64 +0.7
357,068 - CSW01_01750 0.65 +2.4
357,068 - CSW01_01750 0.65 -0.2
357,097 + CSW01_01750 0.67 +1.7
357,097 + CSW01_01750 0.67 +0.4
357,097 + CSW01_01750 0.67 +2.5
357,097 + CSW01_01750 0.67 +0.6
357,097 + CSW01_01750 0.67 +0.2
357,097 + CSW01_01750 0.67 +1.1
357,097 + CSW01_01750 0.67 -1.2
357,097 + CSW01_01750 0.67 +0.8
357,098 - CSW01_01750 0.67 +0.9
357,105 - CSW01_01750 0.67 +0.7
357,105 - CSW01_01750 0.67 +1.0
357,105 - CSW01_01750 0.67 +1.1
357,105 - CSW01_01750 0.67 -0.0
357,105 - CSW01_01750 0.67 -0.2
357,105 - CSW01_01750 0.67 +0.6
357,301 + CSW01_01750 0.81 +1.3
357,301 + CSW01_01750 0.81 +0.4
357,301 + CSW01_01750 0.81 +0.6
357,301 + CSW01_01750 0.81 +1.0
357,301 + CSW01_01750 0.81 +0.2
357,309 - CSW01_01750 0.81 +0.3
357,309 - CSW01_01750 0.81 +1.5
357,311 + CSW01_01750 0.82 -0.4
357,338 - CSW01_01750 0.84 -2.0
357,338 - CSW01_01750 0.84 -0.5
357,348 - CSW01_01750 0.84 +0.6
357,393 + CSW01_01750 0.87 +0.4
357,393 + CSW01_01750 0.87 +0.5
357,393 + CSW01_01750 0.87 +0.2
357,401 - CSW01_01750 0.88 +1.1
357,442 - -0.3
357,500 - +0.3
357,537 + +0.2
357,582 - -0.4
357,582 - +0.4
357,582 - -0.2
357,586 + +0.1
357,619 - -1.0
357,643 + +0.0
357,653 + +0.5
357,653 + +0.4
357,653 + +0.9
357,653 + +0.5
357,653 + +0.4
357,653 + +1.0
357,661 - +0.8
357,661 - -0.7
357,718 + +0.6
357,728 + +1.2
357,746 + +0.1
357,754 - +0.4
357,756 - +0.5
357,772 - +1.0
357,772 - +1.3
357,774 + -0.3
357,774 + -0.8

Or see this region's nucleotide sequence