Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01365

Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01355 and CSW01_01360 are separated by 7 nucleotidesCSW01_01360 and CSW01_01365 are separated by 142 nucleotidesCSW01_01365 and CSW01_01370 are separated by 261 nucleotides CSW01_01355: CSW01_01355 - UDP-glucose 4-epimerase, at 266,132 to 267,103 _01355 CSW01_01360: CSW01_01360 - sugar transferase, at 267,111 to 267,665 _01360 CSW01_01365: CSW01_01365 - MBL fold hydrolase, at 267,808 to 269,175 _01365 CSW01_01370: CSW01_01370 - mechanosensitive ion channel family protein, at 269,437 to 270,675 _01370 Position (kb) 267 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 266.811 kb on - strand, within CSW01_01355at 266.866 kb on + strand, within CSW01_01355at 266.874 kb on - strand, within CSW01_01355at 266.883 kb on + strand, within CSW01_01355at 266.935 kb on - strand, within CSW01_01355at 266.937 kb on + strand, within CSW01_01355at 266.940 kb on - strand, within CSW01_01355at 266.959 kb on + strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 267.020 kb on + strandat 267.063 kb on - strandat 267.150 kb on + strandat 267.150 kb on + strandat 267.158 kb on - strandat 267.161 kb on + strandat 267.169 kb on - strand, within CSW01_01360at 267.169 kb on - strand, within CSW01_01360at 267.171 kb on + strand, within CSW01_01360at 267.173 kb on + strand, within CSW01_01360at 267.179 kb on - strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.305 kb on - strand, within CSW01_01360at 267.384 kb on + strand, within CSW01_01360at 267.415 kb on + strand, within CSW01_01360at 267.421 kb on - strand, within CSW01_01360at 267.423 kb on - strand, within CSW01_01360at 267.537 kb on - strand, within CSW01_01360at 267.612 kb on - strandat 267.627 kb on + strandat 267.653 kb on + strandat 267.687 kb on - strandat 267.689 kb on + strandat 267.705 kb on - strandat 267.721 kb on + strandat 267.738 kb on + strandat 267.813 kb on + strandat 267.815 kb on + strandat 267.828 kb on + strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.878 kb on + strandat 267.880 kb on + strandat 267.886 kb on - strandat 267.906 kb on - strandat 267.970 kb on - strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.989 kb on + strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.999 kb on + strand, within CSW01_01365at 268.006 kb on - strand, within CSW01_01365at 268.019 kb on + strand, within CSW01_01365at 268.020 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.033 kb on + strand, within CSW01_01365at 268.044 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365at 268.110 kb on + strand, within CSW01_01365at 268.150 kb on - strand, within CSW01_01365at 268.166 kb on + strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.205 kb on - strand, within CSW01_01365at 268.243 kb on - strand, within CSW01_01365at 268.248 kb on + strand, within CSW01_01365at 268.256 kb on - strand, within CSW01_01365at 268.342 kb on + strand, within CSW01_01365at 268.455 kb on + strand, within CSW01_01365at 268.455 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.472 kb on + strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.572 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.590 kb on + strand, within CSW01_01365at 268.673 kb on + strand, within CSW01_01365at 268.705 kb on + strand, within CSW01_01365at 268.744 kb on - strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.748 kb on + strand, within CSW01_01365at 268.748 kb on + strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.756 kb on - strand, within CSW01_01365at 268.756 kb on - strand, within CSW01_01365at 268.793 kb on + strand, within CSW01_01365at 268.798 kb on + strand, within CSW01_01365at 268.842 kb on + strand, within CSW01_01365at 268.898 kb on - strand, within CSW01_01365at 268.925 kb on - strand, within CSW01_01365at 268.936 kb on + strand, within CSW01_01365at 268.944 kb on - strand, within CSW01_01365at 268.946 kb on + strand, within CSW01_01365at 268.956 kb on - strand, within CSW01_01365at 268.956 kb on - strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 269.098 kb on + strandat 269.106 kb on - strandat 269.111 kb on + strandat 269.138 kb on + strandat 269.176 kb on + strandat 269.191 kb on - strandat 269.215 kb on - strandat 269.219 kb on + strandat 269.249 kb on - strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.330 kb on + strandat 269.334 kb on - strandat 269.336 kb on - strandat 269.375 kb on + strandat 269.398 kb on - strandat 269.410 kb on - strandat 269.433 kb on + strandat 269.435 kb on + strandat 269.435 kb on + strandat 269.440 kb on + strandat 269.441 kb on - strandat 269.441 kb on - strandat 269.448 kb on - strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.543 kb on + strandat 269.553 kb on - strandat 269.579 kb on + strand, within CSW01_01370at 269.581 kb on + strand, within CSW01_01370at 269.653 kb on + strand, within CSW01_01370at 269.781 kb on - strand, within CSW01_01370at 269.833 kb on + strand, within CSW01_01370at 269.841 kb on - strand, within CSW01_01370at 269.881 kb on + strand, within CSW01_01370at 269.915 kb on - strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 270.001 kb on + strand, within CSW01_01370at 270.014 kb on - strand, within CSW01_01370at 270.058 kb on + strand, within CSW01_01370at 270.164 kb on - strand, within CSW01_01370at 270.172 kb on - strand, within CSW01_01370

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A
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266,811 - CSW01_01355 0.70 +0.2
266,866 + CSW01_01355 0.76 -0.3
266,874 - CSW01_01355 0.76 -1.2
266,883 + CSW01_01355 0.77 -0.2
266,935 - CSW01_01355 0.83 +0.1
266,937 + CSW01_01355 0.83 +0.1
266,940 - CSW01_01355 0.83 -0.6
266,959 + CSW01_01355 0.85 +0.3
266,966 - CSW01_01355 0.86 +1.1
266,966 - CSW01_01355 0.86 +0.0
266,966 - CSW01_01355 0.86 +1.1
266,977 + CSW01_01355 0.87 +0.8
266,977 + CSW01_01355 0.87 -0.2
267,020 + +2.8
267,063 - +0.3
267,150 + +1.0
267,150 + +0.6
267,158 - +0.8
267,161 + +0.5
267,169 - CSW01_01360 0.10 +0.8
267,169 - CSW01_01360 0.10 +1.5
267,171 + CSW01_01360 0.11 -0.0
267,173 + CSW01_01360 0.11 +0.3
267,179 - CSW01_01360 0.12 +1.7
267,256 + CSW01_01360 0.26 +0.3
267,256 + CSW01_01360 0.26 -0.0
267,256 + CSW01_01360 0.26 +2.4
267,264 - CSW01_01360 0.28 +0.3
267,264 - CSW01_01360 0.28 +1.6
267,305 - CSW01_01360 0.35 +4.4
267,384 + CSW01_01360 0.49 -1.8
267,415 + CSW01_01360 0.55 -1.7
267,421 - CSW01_01360 0.56 +0.7
267,423 - CSW01_01360 0.56 +0.4
267,537 - CSW01_01360 0.77 +0.9
267,612 - +2.5
267,627 + +0.9
267,653 + +0.3
267,687 - +4.3
267,689 + +0.2
267,705 - +0.5
267,721 + -0.2
267,738 + -0.8
267,813 + +0.2
267,815 + -0.1
267,828 + +0.1
267,836 - -0.3
267,836 - +0.2
267,836 - -0.1
267,878 + -0.7
267,880 + +0.2
267,886 - +0.1
267,906 - -0.3
267,970 - CSW01_01365 0.12 -1.2
267,975 + CSW01_01365 0.12 +0.6
267,975 + CSW01_01365 0.12 +0.9
267,989 + CSW01_01365 0.13 -1.0
267,990 - CSW01_01365 0.13 -0.3
267,990 - CSW01_01365 0.13 +0.2
267,999 + CSW01_01365 0.14 -0.5
268,006 - CSW01_01365 0.14 -1.2
268,019 + CSW01_01365 0.15 -0.3
268,020 - CSW01_01365 0.15 -0.4
268,025 - CSW01_01365 0.16 -0.2
268,025 - CSW01_01365 0.16 -0.2
268,025 - CSW01_01365 0.16 -0.5
268,025 - CSW01_01365 0.16 -0.4
268,033 + CSW01_01365 0.16 +0.8
268,044 + CSW01_01365 0.17 +0.1
268,076 + CSW01_01365 0.20 +0.0
268,076 + CSW01_01365 0.20 +1.2
268,076 + CSW01_01365 0.20 +0.4
268,084 - CSW01_01365 0.20 +0.3
268,084 - CSW01_01365 0.20 -0.7
268,110 + CSW01_01365 0.22 -0.7
268,150 - CSW01_01365 0.25 +0.4
268,166 + CSW01_01365 0.26 -0.4
268,174 - CSW01_01365 0.27 +0.9
268,174 - CSW01_01365 0.27 -0.7
268,174 - CSW01_01365 0.27 +0.1
268,174 - CSW01_01365 0.27 -0.0
268,174 - CSW01_01365 0.27 -0.3
268,174 - CSW01_01365 0.27 -1.5
268,205 - CSW01_01365 0.29 +2.0
268,243 - CSW01_01365 0.32 +2.2
268,248 + CSW01_01365 0.32 -0.2
268,256 - CSW01_01365 0.33 -0.2
268,342 + CSW01_01365 0.39 +1.7
268,455 + CSW01_01365 0.47 +0.4
268,455 + CSW01_01365 0.47 -0.3
268,460 + CSW01_01365 0.48 +1.3
268,460 + CSW01_01365 0.48 -0.7
268,462 + CSW01_01365 0.48 +0.6
268,462 + CSW01_01365 0.48 -0.0
268,462 + CSW01_01365 0.48 +1.2
268,465 + CSW01_01365 0.48 -0.1
268,465 + CSW01_01365 0.48 -0.2
268,465 + CSW01_01365 0.48 +0.0
268,468 - CSW01_01365 0.48 -0.0
268,468 - CSW01_01365 0.48 +0.2
268,472 + CSW01_01365 0.49 -1.1
268,478 - CSW01_01365 0.49 +0.2
268,478 - CSW01_01365 0.49 +0.6
268,480 - CSW01_01365 0.49 -0.4
268,480 - CSW01_01365 0.49 -0.0
268,480 - CSW01_01365 0.49 -1.6
268,480 - CSW01_01365 0.49 +0.2
268,572 + CSW01_01365 0.56 +0.2
268,577 + CSW01_01365 0.56 +0.2
268,577 + CSW01_01365 0.56 +0.3
268,590 + CSW01_01365 0.57 -0.4
268,673 + CSW01_01365 0.63 +0.3
268,705 + CSW01_01365 0.66 +0.3
268,744 - CSW01_01365 0.68 -0.5
268,746 + CSW01_01365 0.69 +0.2
268,746 + CSW01_01365 0.69 +0.2
268,746 + CSW01_01365 0.69 +0.5
268,746 + CSW01_01365 0.69 -0.1
268,748 + CSW01_01365 0.69 -0.7
268,748 + CSW01_01365 0.69 +0.2
268,754 - CSW01_01365 0.69 -0.5
268,754 - CSW01_01365 0.69 -0.2
268,754 - CSW01_01365 0.69 +0.3
268,754 - CSW01_01365 0.69 +0.1
268,754 - CSW01_01365 0.69 +0.2
268,754 - CSW01_01365 0.69 +0.1
268,756 - CSW01_01365 0.69 +0.2
268,756 - CSW01_01365 0.69 -0.9
268,793 + CSW01_01365 0.72 +0.4
268,798 + CSW01_01365 0.72 +1.6
268,842 + CSW01_01365 0.76 +0.2
268,898 - CSW01_01365 0.80 -0.0
268,925 - CSW01_01365 0.82 +1.9
268,936 + CSW01_01365 0.82 -0.5
268,944 - CSW01_01365 0.83 -1.3
268,946 + CSW01_01365 0.83 -0.6
268,956 - CSW01_01365 0.84 -0.1
268,956 - CSW01_01365 0.84 +0.1
268,973 + CSW01_01365 0.85 -0.2
268,973 + CSW01_01365 0.85 +0.3
268,973 + CSW01_01365 0.85 -0.8
268,973 + CSW01_01365 0.85 -1.3
269,098 + +0.2
269,106 - +0.9
269,111 + -2.7
269,138 + +0.2
269,176 + -0.8
269,191 - -0.5
269,215 - -1.0
269,219 + -0.3
269,249 - -0.0
269,297 + -0.9
269,297 + +0.4
269,297 + +1.0
269,297 + -0.4
269,297 + -0.5
269,297 + -0.4
269,297 + -0.2
269,297 + +0.8
269,305 - -0.3
269,305 - +0.2
269,305 - +0.3
269,305 - +0.3
269,305 - -0.4
269,305 - -0.2
269,305 - -0.2
269,305 - +0.7
269,330 + +0.1
269,334 - +0.0
269,336 - +1.4
269,375 + -0.9
269,398 - +0.2
269,410 - +0.1
269,433 + -0.0
269,435 + +0.1
269,435 + -0.4
269,440 + -0.6
269,441 - +0.2
269,441 - -0.4
269,448 - +0.6
269,490 + +0.5
269,490 + +0.1
269,490 + -1.3
269,490 + -0.2
269,498 - +0.2
269,498 - -0.1
269,498 - +0.1
269,498 - -1.4
269,498 - +0.2
269,498 - +1.4
269,543 + +0.6
269,553 - +0.2
269,579 + CSW01_01370 0.11 -0.5
269,581 + CSW01_01370 0.12 +1.3
269,653 + CSW01_01370 0.17 -0.7
269,781 - CSW01_01370 0.28 +0.5
269,833 + CSW01_01370 0.32 +1.5
269,841 - CSW01_01370 0.33 +1.8
269,881 + CSW01_01370 0.36 +0.6
269,915 - CSW01_01370 0.39 +0.2
269,983 + CSW01_01370 0.44 +0.7
269,983 + CSW01_01370 0.44 +0.0
270,001 + CSW01_01370 0.46 -0.2
270,014 - CSW01_01370 0.47 +0.3
270,058 + CSW01_01370 0.50 +0.3
270,164 - CSW01_01370 0.59 +0.1
270,172 - CSW01_01370 0.59 -1.3

Or see this region's nucleotide sequence