Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01145 and CSW01_01150 are separated by 167 nucleotides CSW01_01150 and CSW01_01155 are separated by 111 nucleotides
CSW01_01145: CSW01_01145 - bifunctional phosphopantothenoylcysteine decarboxylase CoaC/phosphopantothenate--cysteine ligase CoaB, at 222,088 to 223,287
_01145
CSW01_01150: CSW01_01150 - methyl-accepting chemotaxis protein, at 223,455 to 225,149
_01150
CSW01_01155: CSW01_01155 - DNA repair protein RadC, at 225,261 to 225,935
_01155
Position (kb) 223
224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 223.316 kb on + strand at 223.338 kb on + strand at 223.356 kb on + strand at 223.361 kb on + strand at 223.366 kb on - strand at 223.366 kb on - strand at 223.482 kb on + strand at 223.490 kb on - strand at 223.539 kb on + strand at 223.539 kb on + strand at 223.544 kb on + strand at 223.544 kb on + strand at 223.547 kb on - strand at 223.552 kb on - strand at 223.577 kb on - strand at 223.637 kb on + strand, within CSW01_01150 at 223.671 kb on + strand, within CSW01_01150 at 223.671 kb on + strand, within CSW01_01150 at 223.671 kb on + strand, within CSW01_01150 at 223.678 kb on + strand, within CSW01_01150 at 223.777 kb on + strand, within CSW01_01150 at 223.777 kb on + strand, within CSW01_01150 at 223.795 kb on - strand, within CSW01_01150 at 223.797 kb on - strand, within CSW01_01150 at 223.813 kb on - strand, within CSW01_01150 at 223.819 kb on - strand, within CSW01_01150 at 223.833 kb on - strand, within CSW01_01150 at 223.848 kb on + strand, within CSW01_01150 at 223.944 kb on - strand, within CSW01_01150 at 223.961 kb on + strand, within CSW01_01150 at 224.033 kb on - strand, within CSW01_01150 at 224.065 kb on - strand, within CSW01_01150 at 224.133 kb on - strand, within CSW01_01150 at 224.133 kb on - strand, within CSW01_01150 at 224.158 kb on + strand, within CSW01_01150 at 224.158 kb on + strand, within CSW01_01150 at 224.166 kb on - strand, within CSW01_01150 at 224.169 kb on + strand, within CSW01_01150 at 224.178 kb on + strand, within CSW01_01150 at 224.185 kb on + strand, within CSW01_01150 at 224.185 kb on + strand, within CSW01_01150 at 224.231 kb on + strand, within CSW01_01150 at 224.231 kb on + strand, within CSW01_01150 at 224.231 kb on + strand, within CSW01_01150 at 224.231 kb on + strand, within CSW01_01150 at 224.231 kb on + strand, within CSW01_01150 at 224.239 kb on - strand, within CSW01_01150 at 224.239 kb on - strand, within CSW01_01150 at 224.239 kb on - strand, within CSW01_01150 at 224.276 kb on + strand, within CSW01_01150 at 224.306 kb on + strand, within CSW01_01150 at 224.319 kb on + strand, within CSW01_01150 at 224.366 kb on - strand, within CSW01_01150 at 224.382 kb on - strand, within CSW01_01150 at 224.442 kb on + strand, within CSW01_01150 at 224.447 kb on - strand, within CSW01_01150 at 224.457 kb on - strand, within CSW01_01150 at 224.471 kb on + strand, within CSW01_01150 at 224.476 kb on + strand, within CSW01_01150 at 224.540 kb on + strand, within CSW01_01150 at 224.568 kb on + strand, within CSW01_01150 at 224.601 kb on + strand, within CSW01_01150 at 224.633 kb on + strand, within CSW01_01150 at 224.702 kb on + strand, within CSW01_01150 at 224.711 kb on + strand, within CSW01_01150 at 224.724 kb on + strand, within CSW01_01150 at 224.732 kb on - strand, within CSW01_01150 at 224.737 kb on + strand, within CSW01_01150 at 224.737 kb on + strand, within CSW01_01150 at 224.745 kb on - strand, within CSW01_01150 at 224.745 kb on - strand, within CSW01_01150 at 224.745 kb on - strand, within CSW01_01150 at 224.745 kb on - strand, within CSW01_01150 at 224.757 kb on + strand, within CSW01_01150 at 224.769 kb on + strand, within CSW01_01150 at 224.771 kb on + strand, within CSW01_01150 at 224.781 kb on + strand, within CSW01_01150 at 224.794 kb on - strand, within CSW01_01150 at 224.799 kb on - strand, within CSW01_01150 at 224.799 kb on - strand, within CSW01_01150 at 224.821 kb on - strand, within CSW01_01150 at 224.827 kb on + strand, within CSW01_01150 at 224.834 kb on + strand, within CSW01_01150 at 224.844 kb on + strand, within CSW01_01150 at 224.847 kb on + strand, within CSW01_01150 at 224.850 kb on - strand, within CSW01_01150 at 224.856 kb on + strand, within CSW01_01150 at 224.861 kb on + strand, within CSW01_01150 at 224.861 kb on - strand, within CSW01_01150 at 224.906 kb on + strand, within CSW01_01150 at 224.906 kb on + strand, within CSW01_01150 at 224.906 kb on + strand, within CSW01_01150 at 224.915 kb on - strand, within CSW01_01150 at 224.930 kb on + strand, within CSW01_01150 at 224.930 kb on + strand, within CSW01_01150 at 224.930 kb on + strand, within CSW01_01150 at 224.938 kb on - strand, within CSW01_01150 at 224.938 kb on - strand, within CSW01_01150 at 224.938 kb on - strand, within CSW01_01150 at 224.938 kb on - strand, within CSW01_01150 at 224.938 kb on - strand, within CSW01_01150 at 224.938 kb on - strand, within CSW01_01150 at 224.952 kb on - strand, within CSW01_01150 at 224.954 kb on + strand, within CSW01_01150 at 224.981 kb on - strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.064 kb on + strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.072 kb on - strand at 225.074 kb on + strand at 225.082 kb on - strand at 225.088 kb on + strand at 225.096 kb on - strand at 225.096 kb on - strand at 225.096 kb on - strand at 225.258 kb on + strand at 225.265 kb on + strand at 225.334 kb on - strand, within CSW01_01155 at 225.337 kb on + strand, within CSW01_01155 at 225.373 kb on + strand, within CSW01_01155 at 225.379 kb on + strand, within CSW01_01155 at 225.392 kb on + strand, within CSW01_01155 at 225.395 kb on - strand, within CSW01_01155 at 225.400 kb on - strand, within CSW01_01155 at 225.440 kb on + strand, within CSW01_01155 at 225.448 kb on - strand, within CSW01_01155 at 225.448 kb on - strand, within CSW01_01155 at 225.448 kb on - strand, within CSW01_01155 at 225.448 kb on - strand, within CSW01_01155 at 225.477 kb on + strand, within CSW01_01155 at 225.477 kb on + strand, within CSW01_01155 at 225.477 kb on + strand, within CSW01_01155 at 225.477 kb on + strand, within CSW01_01155 at 225.485 kb on - strand, within CSW01_01155 at 225.485 kb on - strand, within CSW01_01155 at 225.485 kb on - strand, within CSW01_01155 at 225.485 kb on - strand, within CSW01_01155 at 225.513 kb on + strand, within CSW01_01155 at 225.513 kb on + strand, within CSW01_01155 at 225.530 kb on + strand, within CSW01_01155 at 225.530 kb on + strand, within CSW01_01155 at 225.530 kb on + strand, within CSW01_01155 at 225.538 kb on - strand, within CSW01_01155 at 225.555 kb on - strand, within CSW01_01155 at 225.559 kb on + strand, within CSW01_01155 at 225.559 kb on + strand, within CSW01_01155 at 225.564 kb on + strand, within CSW01_01155 at 225.564 kb on + strand, within CSW01_01155 at 225.564 kb on + strand, within CSW01_01155 at 225.564 kb on + strand, within CSW01_01155 at 225.564 kb on + strand, within CSW01_01155 at 225.564 kb on + strand, within CSW01_01155 at 225.567 kb on - strand, within CSW01_01155 at 225.567 kb on - strand, within CSW01_01155 at 225.569 kb on + strand, within CSW01_01155 at 225.569 kb on + strand, within CSW01_01155 at 225.572 kb on - strand, within CSW01_01155 at 225.572 kb on - strand, within CSW01_01155 at 225.572 kb on - strand, within CSW01_01155 at 225.572 kb on - strand, within CSW01_01155 at 225.574 kb on + strand, within CSW01_01155 at 225.632 kb on + strand, within CSW01_01155 at 225.720 kb on - strand, within CSW01_01155 at 225.749 kb on + strand, within CSW01_01155 at 225.749 kb on + strand, within CSW01_01155 at 225.757 kb on - strand, within CSW01_01155 at 225.757 kb on - strand, within CSW01_01155 at 225.757 kb on - strand, within CSW01_01155 at 225.757 kb on - strand, within CSW01_01155 at 225.806 kb on + strand, within CSW01_01155 at 225.816 kb on + strand, within CSW01_01155 at 225.821 kb on + strand, within CSW01_01155 at 225.829 kb on + strand, within CSW01_01155 at 225.829 kb on + strand, within CSW01_01155 at 225.853 kb on + strand, within CSW01_01155 at 225.859 kb on - strand, within CSW01_01155 at 225.910 kb on + strand at 225.934 kb on + strand at 225.934 kb on + strand at 225.942 kb on - strand at 225.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A remove 223,316 + +0.7 223,338 + +1.2 223,356 + +0.0 223,361 + -0.3 223,366 - +0.4 223,366 - -0.4 223,482 + -0.1 223,490 - -0.1 223,539 + +0.0 223,539 + +0.7 223,544 + +0.0 223,544 + +0.2 223,547 - +0.4 223,552 - +1.3 223,577 - -0.4 223,637 + CSW01_01150 0.11 +0.8 223,671 + CSW01_01150 0.13 +0.0 223,671 + CSW01_01150 0.13 +0.1 223,671 + CSW01_01150 0.13 -0.0 223,678 + CSW01_01150 0.13 -0.2 223,777 + CSW01_01150 0.19 -0.1 223,777 + CSW01_01150 0.19 +0.3 223,795 - CSW01_01150 0.20 -0.5 223,797 - CSW01_01150 0.20 +0.1 223,813 - CSW01_01150 0.21 +0.0 223,819 - CSW01_01150 0.21 +0.7 223,833 - CSW01_01150 0.22 -0.3 223,848 + CSW01_01150 0.23 +0.9 223,944 - CSW01_01150 0.29 -0.6 223,961 + CSW01_01150 0.30 +0.0 224,033 - CSW01_01150 0.34 +1.2 224,065 - CSW01_01150 0.36 +0.8 224,133 - CSW01_01150 0.40 -0.1 224,133 - CSW01_01150 0.40 +0.1 224,158 + CSW01_01150 0.41 -1.0 224,158 + CSW01_01150 0.41 -0.3 224,166 - CSW01_01150 0.42 -0.2 224,169 + CSW01_01150 0.42 +0.3 224,178 + CSW01_01150 0.43 -0.1 224,185 + CSW01_01150 0.43 +0.4 224,185 + CSW01_01150 0.43 +0.4 224,231 + CSW01_01150 0.46 +1.2 224,231 + CSW01_01150 0.46 -0.3 224,231 + CSW01_01150 0.46 +0.4 224,231 + CSW01_01150 0.46 -0.2 224,231 + CSW01_01150 0.46 +0.1 224,239 - CSW01_01150 0.46 +0.2 224,239 - CSW01_01150 0.46 -0.9 224,239 - CSW01_01150 0.46 -0.4 224,276 + CSW01_01150 0.48 +0.3 224,306 + CSW01_01150 0.50 -0.3 224,319 + CSW01_01150 0.51 -0.3 224,366 - CSW01_01150 0.54 +0.3 224,382 - CSW01_01150 0.55 +0.3 224,442 + CSW01_01150 0.58 -0.5 224,447 - CSW01_01150 0.59 -0.9 224,457 - CSW01_01150 0.59 +0.1 224,471 + CSW01_01150 0.60 -0.3 224,476 + CSW01_01150 0.60 +0.0 224,540 + CSW01_01150 0.64 -0.4 224,568 + CSW01_01150 0.66 +0.2 224,601 + CSW01_01150 0.68 +1.2 224,633 + CSW01_01150 0.69 -0.1 224,702 + CSW01_01150 0.74 -0.4 224,711 + CSW01_01150 0.74 -0.4 224,724 + CSW01_01150 0.75 +0.0 224,732 - CSW01_01150 0.75 +0.2 224,737 + CSW01_01150 0.76 +0.5 224,737 + CSW01_01150 0.76 +1.1 224,745 - CSW01_01150 0.76 +0.5 224,745 - CSW01_01150 0.76 +0.1 224,745 - CSW01_01150 0.76 +0.9 224,745 - CSW01_01150 0.76 -0.5 224,757 + CSW01_01150 0.77 +0.6 224,769 + CSW01_01150 0.78 +0.2 224,771 + CSW01_01150 0.78 +0.2 224,781 + CSW01_01150 0.78 +0.7 224,794 - CSW01_01150 0.79 +1.0 224,799 - CSW01_01150 0.79 +0.1 224,799 - CSW01_01150 0.79 -0.2 224,821 - CSW01_01150 0.81 +0.1 224,827 + CSW01_01150 0.81 -0.1 224,834 + CSW01_01150 0.81 +0.7 224,844 + CSW01_01150 0.82 +0.3 224,847 + CSW01_01150 0.82 -0.1 224,850 - CSW01_01150 0.82 -0.1 224,856 + CSW01_01150 0.83 -0.2 224,861 + CSW01_01150 0.83 +0.5 224,861 - CSW01_01150 0.83 +0.6 224,906 + CSW01_01150 0.86 -0.6 224,906 + CSW01_01150 0.86 +0.8 224,906 + CSW01_01150 0.86 -0.3 224,915 - CSW01_01150 0.86 +0.2 224,930 + CSW01_01150 0.87 +0.4 224,930 + CSW01_01150 0.87 -0.3 224,930 + CSW01_01150 0.87 +0.6 224,938 - CSW01_01150 0.87 +0.2 224,938 - CSW01_01150 0.87 -1.1 224,938 - CSW01_01150 0.87 +1.0 224,938 - CSW01_01150 0.87 -0.4 224,938 - CSW01_01150 0.87 -0.8 224,938 - CSW01_01150 0.87 -0.4 224,952 - CSW01_01150 0.88 +0.0 224,954 + CSW01_01150 0.88 +2.3 224,981 - -0.1 225,064 + -0.8 225,064 + +0.6 225,064 + +0.5 225,064 + -0.8 225,064 + +0.6 225,064 + +0.8 225,064 + +1.1 225,064 + -0.4 225,064 + +0.1 225,064 + +0.6 225,064 + -0.4 225,064 + -0.1 225,064 + +0.2 225,064 + +0.5 225,064 + +0.2 225,064 + +0.3 225,064 + +0.1 225,064 + +1.3 225,072 - +0.3 225,072 - -0.0 225,072 - -0.3 225,072 - -0.1 225,072 - -0.8 225,072 - +0.7 225,072 - +0.1 225,072 - -0.4 225,072 - -0.4 225,072 - +0.8 225,072 - -0.1 225,072 - +0.3 225,072 - -0.2 225,072 - -0.9 225,072 - -0.6 225,072 - -0.6 225,072 - +0.4 225,072 - +0.9 225,072 - +0.3 225,072 - -0.7 225,072 - +0.6 225,072 - +0.3 225,072 - -0.2 225,072 - -0.3 225,072 - +0.2 225,072 - +0.8 225,072 - -0.1 225,072 - -1.0 225,072 - -0.1 225,072 - +0.3 225,072 - -0.1 225,074 + -0.1 225,082 - -2.5 225,088 + +0.5 225,096 - +0.4 225,096 - -0.1 225,096 - +0.2 225,258 + -0.8 225,265 + +1.4 225,334 - CSW01_01155 0.11 +0.1 225,337 + CSW01_01155 0.11 -0.7 225,373 + CSW01_01155 0.17 -1.0 225,379 + CSW01_01155 0.17 -0.1 225,392 + CSW01_01155 0.19 +0.1 225,395 - CSW01_01155 0.20 +0.3 225,400 - CSW01_01155 0.21 +0.2 225,440 + CSW01_01155 0.27 +0.5 225,448 - CSW01_01155 0.28 +1.0 225,448 - CSW01_01155 0.28 -0.3 225,448 - CSW01_01155 0.28 +0.7 225,448 - CSW01_01155 0.28 +0.4 225,477 + CSW01_01155 0.32 +0.1 225,477 + CSW01_01155 0.32 -0.3 225,477 + CSW01_01155 0.32 -0.4 225,477 + CSW01_01155 0.32 +1.0 225,485 - CSW01_01155 0.33 +1.1 225,485 - CSW01_01155 0.33 -1.7 225,485 - CSW01_01155 0.33 -0.8 225,485 - CSW01_01155 0.33 +0.5 225,513 + CSW01_01155 0.37 +0.3 225,513 + CSW01_01155 0.37 -0.6 225,530 + CSW01_01155 0.40 -0.1 225,530 + CSW01_01155 0.40 -0.3 225,530 + CSW01_01155 0.40 +1.0 225,538 - CSW01_01155 0.41 -0.5 225,555 - CSW01_01155 0.44 -0.0 225,559 + CSW01_01155 0.44 -0.6 225,559 + CSW01_01155 0.44 -0.6 225,564 + CSW01_01155 0.45 +0.8 225,564 + CSW01_01155 0.45 -0.5 225,564 + CSW01_01155 0.45 +0.1 225,564 + CSW01_01155 0.45 +1.8 225,564 + CSW01_01155 0.45 +0.0 225,564 + CSW01_01155 0.45 +0.3 225,567 - CSW01_01155 0.45 +0.3 225,567 - CSW01_01155 0.45 -0.7 225,569 + CSW01_01155 0.46 -0.5 225,569 + CSW01_01155 0.46 +0.5 225,572 - CSW01_01155 0.46 +3.3 225,572 - CSW01_01155 0.46 +0.8 225,572 - CSW01_01155 0.46 +0.3 225,572 - CSW01_01155 0.46 +0.1 225,574 + CSW01_01155 0.46 -0.5 225,632 + CSW01_01155 0.55 +0.1 225,720 - CSW01_01155 0.68 -0.2 225,749 + CSW01_01155 0.72 +2.0 225,749 + CSW01_01155 0.72 +0.0 225,757 - CSW01_01155 0.73 -0.3 225,757 - CSW01_01155 0.73 -0.3 225,757 - CSW01_01155 0.73 +0.9 225,757 - CSW01_01155 0.73 -0.9 225,806 + CSW01_01155 0.81 +0.9 225,816 + CSW01_01155 0.82 -0.4 225,821 + CSW01_01155 0.83 -0.1 225,829 + CSW01_01155 0.84 -0.9 225,829 + CSW01_01155 0.84 -0.3 225,853 + CSW01_01155 0.88 -0.5 225,859 - CSW01_01155 0.89 +0.3 225,910 + +0.6 225,934 + -0.4 225,934 + -0.1 225,942 - -0.3 225,948 - -0.1
Or see this region's nucleotide sequence