Experiment: LB_0.5%bileacids_aerobic_18HR_ZN19A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00915 and CSW01_00920 are separated by 154 nucleotides CSW01_00920 and CSW01_00925 are separated by 2 nucleotides
CSW01_00915: CSW01_00915 - nickel/dipeptide/oligopeptide ABC transporter substrate-binding protein, at 170,340 to 171,896
_00915
CSW01_00920: CSW01_00920 - ABC transporter permease, at 172,051 to 173,028
_00920
CSW01_00925: CSW01_00925 - ABC transporter permease, at 173,031 to 173,969
_00925
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.053 kb on + strand, within CSW01_00915 at 171.056 kb on + strand, within CSW01_00915 at 171.056 kb on + strand, within CSW01_00915 at 171.124 kb on + strand, within CSW01_00915 at 171.132 kb on - strand, within CSW01_00915 at 171.132 kb on - strand, within CSW01_00915 at 171.132 kb on - strand, within CSW01_00915 at 171.148 kb on + strand, within CSW01_00915 at 171.149 kb on - strand, within CSW01_00915 at 171.182 kb on + strand, within CSW01_00915 at 171.217 kb on + strand, within CSW01_00915 at 171.269 kb on - strand, within CSW01_00915 at 171.283 kb on + strand, within CSW01_00915 at 171.293 kb on + strand, within CSW01_00915 at 171.337 kb on - strand, within CSW01_00915 at 171.340 kb on + strand, within CSW01_00915 at 171.340 kb on + strand, within CSW01_00915 at 171.399 kb on + strand, within CSW01_00915 at 171.401 kb on - strand, within CSW01_00915 at 171.402 kb on - strand, within CSW01_00915 at 171.402 kb on - strand, within CSW01_00915 at 171.407 kb on - strand, within CSW01_00915 at 171.412 kb on - strand, within CSW01_00915 at 171.438 kb on + strand, within CSW01_00915 at 171.505 kb on - strand, within CSW01_00915 at 171.521 kb on + strand, within CSW01_00915 at 171.521 kb on + strand, within CSW01_00915 at 171.529 kb on - strand, within CSW01_00915 at 171.529 kb on - strand, within CSW01_00915 at 171.550 kb on - strand, within CSW01_00915 at 171.616 kb on - strand, within CSW01_00915 at 171.637 kb on - strand, within CSW01_00915 at 171.638 kb on + strand, within CSW01_00915 at 171.638 kb on + strand, within CSW01_00915 at 171.638 kb on + strand, within CSW01_00915 at 171.646 kb on - strand, within CSW01_00915 at 171.646 kb on - strand, within CSW01_00915 at 171.653 kb on - strand, within CSW01_00915 at 171.700 kb on - strand, within CSW01_00915 at 171.736 kb on - strand, within CSW01_00915 at 171.736 kb on - strand, within CSW01_00915 at 171.758 kb on - strand at 171.843 kb on + strand at 171.852 kb on + strand at 171.852 kb on + strand at 171.891 kb on + strand at 171.905 kb on - strand at 171.905 kb on - strand at 171.911 kb on + strand at 171.914 kb on - strand at 171.925 kb on + strand at 171.925 kb on + strand at 171.941 kb on - strand at 172.065 kb on + strand at 172.109 kb on + strand at 172.173 kb on - strand, within CSW01_00920 at 172.198 kb on - strand, within CSW01_00920 at 172.208 kb on + strand, within CSW01_00920 at 172.216 kb on - strand, within CSW01_00920 at 172.264 kb on + strand, within CSW01_00920 at 172.272 kb on - strand, within CSW01_00920 at 172.348 kb on - strand, within CSW01_00920 at 172.358 kb on + strand, within CSW01_00920 at 172.366 kb on - strand, within CSW01_00920 at 172.371 kb on - strand, within CSW01_00920 at 172.381 kb on - strand, within CSW01_00920 at 172.392 kb on + strand, within CSW01_00920 at 172.500 kb on + strand, within CSW01_00920 at 172.510 kb on - strand, within CSW01_00920 at 172.525 kb on + strand, within CSW01_00920 at 172.536 kb on + strand, within CSW01_00920 at 172.538 kb on + strand, within CSW01_00920 at 172.564 kb on + strand, within CSW01_00920 at 172.613 kb on - strand, within CSW01_00920 at 172.623 kb on - strand, within CSW01_00920 at 172.635 kb on + strand, within CSW01_00920 at 172.690 kb on + strand, within CSW01_00920 at 172.690 kb on + strand, within CSW01_00920 at 172.691 kb on - strand, within CSW01_00920 at 172.697 kb on + strand, within CSW01_00920 at 172.698 kb on - strand, within CSW01_00920 at 172.705 kb on - strand, within CSW01_00920 at 172.705 kb on - strand, within CSW01_00920 at 172.707 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.722 kb on + strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.730 kb on - strand, within CSW01_00920 at 172.799 kb on + strand, within CSW01_00920 at 172.814 kb on + strand, within CSW01_00920 at 172.832 kb on - strand, within CSW01_00920 at 172.833 kb on - strand, within CSW01_00920 at 172.897 kb on - strand, within CSW01_00920 at 172.977 kb on + strand at 172.979 kb on + strand at 173.023 kb on + strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.043 kb on - strand at 173.066 kb on - strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.068 kb on + strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.076 kb on - strand at 173.092 kb on + strand at 173.100 kb on - strand at 173.100 kb on - strand at 173.125 kb on + strand, within CSW01_00925 at 173.125 kb on + strand, within CSW01_00925 at 173.125 kb on + strand, within CSW01_00925 at 173.125 kb on + strand, within CSW01_00925 at 173.133 kb on - strand, within CSW01_00925 at 173.191 kb on - strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.228 kb on + strand, within CSW01_00925 at 173.229 kb on + strand, within CSW01_00925 at 173.275 kb on + strand, within CSW01_00925 at 173.313 kb on + strand, within CSW01_00925 at 173.359 kb on + strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.367 kb on - strand, within CSW01_00925 at 173.448 kb on + strand, within CSW01_00925 at 173.643 kb on - strand, within CSW01_00925 at 173.659 kb on + strand, within CSW01_00925 at 173.667 kb on - strand, within CSW01_00925 at 173.686 kb on + strand, within CSW01_00925 at 173.763 kb on - strand, within CSW01_00925 at 173.781 kb on + strand, within CSW01_00925 at 173.789 kb on - strand, within CSW01_00925 at 173.816 kb on - strand, within CSW01_00925 at 173.827 kb on + strand, within CSW01_00925 at 173.964 kb on + strand at 173.964 kb on + strand at 173.964 kb on + strand at 173.972 kb on - strand at 173.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_18HR_ZN19A remove 171,053 + CSW01_00915 0.46 +0.2 171,056 + CSW01_00915 0.46 -0.3 171,056 + CSW01_00915 0.46 -0.8 171,124 + CSW01_00915 0.50 +0.6 171,132 - CSW01_00915 0.51 -0.5 171,132 - CSW01_00915 0.51 -0.6 171,132 - CSW01_00915 0.51 -0.2 171,148 + CSW01_00915 0.52 +0.4 171,149 - CSW01_00915 0.52 -1.3 171,182 + CSW01_00915 0.54 +0.4 171,217 + CSW01_00915 0.56 +0.4 171,269 - CSW01_00915 0.60 +0.9 171,283 + CSW01_00915 0.61 -1.5 171,293 + CSW01_00915 0.61 +1.3 171,337 - CSW01_00915 0.64 +0.1 171,340 + CSW01_00915 0.64 +0.1 171,340 + CSW01_00915 0.64 +0.2 171,399 + CSW01_00915 0.68 +0.3 171,401 - CSW01_00915 0.68 +1.0 171,402 - CSW01_00915 0.68 -0.3 171,402 - CSW01_00915 0.68 -1.0 171,407 - CSW01_00915 0.69 +0.3 171,412 - CSW01_00915 0.69 -0.1 171,438 + CSW01_00915 0.71 -0.5 171,505 - CSW01_00915 0.75 -0.4 171,521 + CSW01_00915 0.76 +0.7 171,521 + CSW01_00915 0.76 -0.3 171,529 - CSW01_00915 0.76 +1.9 171,529 - CSW01_00915 0.76 +0.6 171,550 - CSW01_00915 0.78 +0.1 171,616 - CSW01_00915 0.82 +0.2 171,637 - CSW01_00915 0.83 -0.9 171,638 + CSW01_00915 0.83 -1.7 171,638 + CSW01_00915 0.83 -0.7 171,638 + CSW01_00915 0.83 +0.1 171,646 - CSW01_00915 0.84 +0.2 171,646 - CSW01_00915 0.84 +0.3 171,653 - CSW01_00915 0.84 -1.0 171,700 - CSW01_00915 0.87 +1.4 171,736 - CSW01_00915 0.90 +0.1 171,736 - CSW01_00915 0.90 +0.1 171,758 - +0.6 171,843 + -1.9 171,852 + +0.8 171,852 + -0.7 171,891 + -0.5 171,905 - +0.9 171,905 - +0.9 171,911 + +1.1 171,914 - +0.0 171,925 + -0.1 171,925 + +0.6 171,941 - +1.3 172,065 + +0.5 172,109 + -0.9 172,173 - CSW01_00920 0.12 +2.5 172,198 - CSW01_00920 0.15 +0.1 172,208 + CSW01_00920 0.16 +1.2 172,216 - CSW01_00920 0.17 +0.4 172,264 + CSW01_00920 0.22 +0.0 172,272 - CSW01_00920 0.23 +0.1 172,348 - CSW01_00920 0.30 -0.3 172,358 + CSW01_00920 0.31 -1.0 172,366 - CSW01_00920 0.32 -0.2 172,371 - CSW01_00920 0.33 -0.0 172,381 - CSW01_00920 0.34 -0.1 172,392 + CSW01_00920 0.35 -0.1 172,500 + CSW01_00920 0.46 +2.1 172,510 - CSW01_00920 0.47 -0.5 172,525 + CSW01_00920 0.48 +0.1 172,536 + CSW01_00920 0.50 +0.1 172,538 + CSW01_00920 0.50 +0.1 172,564 + CSW01_00920 0.52 -0.4 172,613 - CSW01_00920 0.57 +0.4 172,623 - CSW01_00920 0.58 -0.6 172,635 + CSW01_00920 0.60 +0.8 172,690 + CSW01_00920 0.65 -0.6 172,690 + CSW01_00920 0.65 +0.9 172,691 - CSW01_00920 0.65 -0.5 172,697 + CSW01_00920 0.66 -0.4 172,698 - CSW01_00920 0.66 +0.0 172,705 - CSW01_00920 0.67 +0.7 172,705 - CSW01_00920 0.67 -0.5 172,707 + CSW01_00920 0.67 -0.3 172,722 + CSW01_00920 0.69 +0.2 172,722 + CSW01_00920 0.69 +0.2 172,722 + CSW01_00920 0.69 +0.2 172,722 + CSW01_00920 0.69 -0.2 172,722 + CSW01_00920 0.69 +0.2 172,722 + CSW01_00920 0.69 -0.5 172,722 + CSW01_00920 0.69 +1.1 172,730 - CSW01_00920 0.69 +0.2 172,730 - CSW01_00920 0.69 +0.6 172,730 - CSW01_00920 0.69 -0.4 172,730 - CSW01_00920 0.69 -0.4 172,730 - CSW01_00920 0.69 -0.2 172,730 - CSW01_00920 0.69 -0.2 172,730 - CSW01_00920 0.69 +0.2 172,730 - CSW01_00920 0.69 -0.3 172,730 - CSW01_00920 0.69 -1.8 172,730 - CSW01_00920 0.69 +0.1 172,730 - CSW01_00920 0.69 +0.1 172,799 + CSW01_00920 0.76 +0.4 172,814 + CSW01_00920 0.78 -2.6 172,832 - CSW01_00920 0.80 -0.4 172,833 - CSW01_00920 0.80 -0.0 172,897 - CSW01_00920 0.87 +0.3 172,977 + +0.4 172,979 + -0.1 173,023 + -0.2 173,043 - +2.5 173,043 - +0.4 173,043 - -0.2 173,043 - +0.4 173,043 - +0.7 173,066 - +0.4 173,068 + +1.1 173,068 + -0.1 173,068 + +1.2 173,068 + +0.9 173,068 + -0.3 173,068 + -0.6 173,068 + -1.7 173,068 + -0.3 173,068 + -0.4 173,068 + +0.4 173,068 + -0.7 173,068 + -1.0 173,068 + +0.4 173,068 + +0.5 173,068 + -0.5 173,068 + +0.3 173,068 + -0.0 173,068 + -0.3 173,068 + -0.1 173,068 + +0.3 173,068 + +0.4 173,068 + +1.2 173,068 + -0.3 173,076 - +0.3 173,076 - +1.1 173,076 - +0.4 173,076 - -0.0 173,076 - -0.4 173,076 - +0.5 173,076 - +0.7 173,076 - +0.4 173,076 - -0.7 173,076 - +0.3 173,076 - +0.3 173,076 - +0.2 173,076 - +0.3 173,076 - +0.2 173,076 - +0.7 173,076 - +2.0 173,076 - +1.1 173,076 - -0.2 173,076 - +0.1 173,076 - -1.2 173,092 + +2.1 173,100 - -0.3 173,100 - +0.4 173,125 + CSW01_00925 0.10 +0.4 173,125 + CSW01_00925 0.10 -0.1 173,125 + CSW01_00925 0.10 +0.4 173,125 + CSW01_00925 0.10 +0.2 173,133 - CSW01_00925 0.11 -0.7 173,191 - CSW01_00925 0.17 -0.9 173,228 + CSW01_00925 0.21 -0.5 173,228 + CSW01_00925 0.21 -0.6 173,228 + CSW01_00925 0.21 +0.5 173,228 + CSW01_00925 0.21 +0.6 173,229 + CSW01_00925 0.21 -0.1 173,275 + CSW01_00925 0.26 +0.1 173,313 + CSW01_00925 0.30 -1.1 173,359 + CSW01_00925 0.35 +0.1 173,367 - CSW01_00925 0.36 +1.6 173,367 - CSW01_00925 0.36 -0.4 173,367 - CSW01_00925 0.36 -0.1 173,367 - CSW01_00925 0.36 -0.8 173,448 + CSW01_00925 0.44 -1.0 173,643 - CSW01_00925 0.65 -0.2 173,659 + CSW01_00925 0.67 +0.4 173,667 - CSW01_00925 0.68 -0.1 173,686 + CSW01_00925 0.70 +0.3 173,763 - CSW01_00925 0.78 -0.1 173,781 + CSW01_00925 0.80 -1.0 173,789 - CSW01_00925 0.81 +1.5 173,816 - CSW01_00925 0.84 +0.9 173,827 + CSW01_00925 0.85 -0.1 173,964 + -0.0 173,964 + +0.1 173,964 + +0.5 173,972 - +0.9 173,972 - -0.3
Or see this region's nucleotide sequence