Strain Fitness in Shewanella loihica PV-4 around Shew_3586

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3585 and Shew_3586 are separated by 187 nucleotidesShew_3586 and Shew_3587 are separated by 224 nucleotides Shew_3585: Shew_3585 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 4,281,680 to 4,283,785 _3585 Shew_3586: Shew_3586 - DTW domain-containing protein (RefSeq), at 4,283,973 to 4,284,575 _3586 Shew_3587: Shew_3587 - hypothetical protein (RefSeq), at 4,284,800 to 4,285,753 _3587 Position (kb) 4283 4284 4285Strain fitness (log2 ratio) -1 0 1at 4283.042 kb on - strand, within Shew_3585at 4283.060 kb on - strand, within Shew_3585at 4283.225 kb on - strand, within Shew_3585at 4283.286 kb on - strand, within Shew_3585at 4283.288 kb on + strand, within Shew_3585at 4283.296 kb on - strand, within Shew_3585at 4283.456 kb on - strand, within Shew_3585at 4283.458 kb on + strand, within Shew_3585at 4283.621 kb on - strandat 4283.949 kb on - strandat 4283.949 kb on - strandat 4284.151 kb on - strand, within Shew_3586at 4284.276 kb on + strand, within Shew_3586at 4284.334 kb on + strand, within Shew_3586at 4284.342 kb on - strand, within Shew_3586at 4284.342 kb on - strand, within Shew_3586at 4284.347 kb on - strand, within Shew_3586at 4284.868 kb on + strandat 4284.898 kb on - strand, within Shew_3587at 4284.943 kb on - strand, within Shew_3587at 4285.315 kb on + strand, within Shew_3587at 4285.477 kb on - strand, within Shew_3587at 4285.534 kb on - strand, within Shew_3587

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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4,283,042 - Shew_3585 0.65 +0.4
4,283,060 - Shew_3585 0.66 +1.1
4,283,225 - Shew_3585 0.73 -1.7
4,283,286 - Shew_3585 0.76 +0.4
4,283,288 + Shew_3585 0.76 +0.6
4,283,296 - Shew_3585 0.77 -0.3
4,283,456 - Shew_3585 0.84 +0.7
4,283,458 + Shew_3585 0.84 -0.2
4,283,621 - +0.8
4,283,949 - -0.6
4,283,949 - -0.0
4,284,151 - Shew_3586 0.30 -0.1
4,284,276 + Shew_3586 0.50 +0.1
4,284,334 + Shew_3586 0.60 +1.1
4,284,342 - Shew_3586 0.61 +0.5
4,284,342 - Shew_3586 0.61 -0.5
4,284,347 - Shew_3586 0.62 +1.0
4,284,868 + +0.4
4,284,898 - Shew_3587 0.10 -0.1
4,284,943 - Shew_3587 0.15 +0.1
4,285,315 + Shew_3587 0.54 +0.6
4,285,477 - Shew_3587 0.71 +0.4
4,285,534 - Shew_3587 0.77 +0.4

Or see this region's nucleotide sequence