Strain Fitness in Shewanella loihica PV-4 around Shew_3448

Experiment: Motility M4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3446 and Shew_3447 are separated by 27 nucleotidesShew_3447 and lpxC are separated by 3 nucleotideslpxC and Shew_3449 are separated by 178 nucleotides Shew_3446: Shew_3446 - peptidase M23B (RefSeq), at 4,127,902 to 4,128,801 _3446 Shew_3447: Shew_3447 - hypothetical protein (RefSeq), at 4,128,829 to 4,129,284 _3447 Shew_3448: lpxC - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (RefSeq), at 4,129,288 to 4,130,208 lpxC Shew_3449: Shew_3449 - cell division protein FtsZ (RefSeq), at 4,130,387 to 4,131,562 _3449 Position (kb) 4129 4130 4131Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4128.391 kb on - strand, within Shew_3446at 4128.533 kb on + strand, within Shew_3446at 4128.650 kb on + strand, within Shew_3446at 4129.265 kb on + strandat 4130.289 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
remove
4,128,391 - Shew_3446 0.54 -0.5
4,128,533 + Shew_3446 0.70 -3.4
4,128,650 + Shew_3446 0.83 -1.9
4,129,265 + -0.1
4,130,289 - -4.3

Or see this region's nucleotide sequence