Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3372 and Shew_3373 are separated by 225 nucleotides Shew_3373 and Shew_3374 are separated by 220 nucleotides Shew_3374 and Shew_3375 overlap by 4 nucleotides
Shew_3372: Shew_3372 - arginase/agmatinase/formiminoglutamase (RefSeq), at 4,021,340 to 4,022,383
_3372
Shew_3373: Shew_3373 - ubiquinone/menaquinone biosynthesis methyltransferase (RefSeq), at 4,022,609 to 4,023,364
_3373
Shew_3374: Shew_3374 - hypothetical protein (RefSeq), at 4,023,585 to 4,024,208
_3374
Shew_3375: Shew_3375 - 2-polyprenylphenol 6-hydroxylase (RefSeq), at 4,024,205 to 4,025,854
_3375
Position (kb) 4022
4023
4024 Strain fitness (log2 ratio) -1
0
1 at 4021.637 kb on - strand, within Shew_3372 at 4021.659 kb on + strand, within Shew_3372 at 4021.659 kb on + strand, within Shew_3372 at 4021.690 kb on + strand, within Shew_3372 at 4021.698 kb on - strand, within Shew_3372 at 4022.323 kb on - strand at 4022.419 kb on + strand at 4023.691 kb on + strand, within Shew_3374 at 4023.821 kb on + strand, within Shew_3374 at 4024.099 kb on + strand, within Shew_3374
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 4,021,637 - Shew_3372 0.28 -1.6 4,021,659 + Shew_3372 0.31 -0.1 4,021,659 + Shew_3372 0.31 -1.1 4,021,690 + Shew_3372 0.34 -0.3 4,021,698 - Shew_3372 0.34 +0.8 4,022,323 - -0.3 4,022,419 + -0.2 4,023,691 + Shew_3374 0.17 +1.3 4,023,821 + Shew_3374 0.38 -0.0 4,024,099 + Shew_3374 0.82 +0.2
Or see this region's nucleotide sequence