Strain Fitness in Shewanella loihica PV-4 around Shew_3342

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3341 and Shew_3342 are separated by 200 nucleotidesShew_3342 and Shew_3343 overlap by 4 nucleotides Shew_3341: Shew_3341 - diguanylate cyclase with GAF sensor (RefSeq), at 3,985,748 to 3,986,728 _3341 Shew_3342: Shew_3342 - two component Fis family transcriptional regulator (RefSeq), at 3,986,929 to 3,987,465 _3342 Shew_3343: Shew_3343 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 3,987,462 to 3,988,709 _3343 Position (kb) 3986 3987 3988Strain fitness (log2 ratio) -1 0 1at 3986.541 kb on + strand, within Shew_3341at 3986.588 kb on + strand, within Shew_3341at 3986.711 kb on - strandat 3986.836 kb on - strandat 3986.836 kb on - strandat 3986.949 kb on - strandat 3987.043 kb on + strand, within Shew_3342at 3987.352 kb on - strand, within Shew_3342at 3987.523 kb on - strandat 3988.158 kb on - strand, within Shew_3343at 3988.209 kb on - strand, within Shew_3343at 3988.293 kb on + strand, within Shew_3343

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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3,986,541 + Shew_3341 0.81 -0.5
3,986,588 + Shew_3341 0.86 -0.1
3,986,711 - +0.4
3,986,836 - +1.2
3,986,836 - -0.0
3,986,949 - +0.5
3,987,043 + Shew_3342 0.21 +0.6
3,987,352 - Shew_3342 0.79 -0.4
3,987,523 - +0.4
3,988,158 - Shew_3343 0.56 +1.2
3,988,209 - Shew_3343 0.60 +1.7
3,988,293 + Shew_3343 0.67 +0.4

Or see this region's nucleotide sequence