Strain Fitness in Shewanella loihica PV-4 around Shew_2919

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_R0095 and Shew_R0096 are separated by 132 nucleotidesShew_R0096 and Shew_R0097 are separated by 20 nucleotidesShew_R0097 and Shew_R0098 are separated by 25 nucleotidesShew_R0098 and Shew_R0099 are separated by 48 nucleotidesShew_R0099 and Shew_R0100 are separated by 69 nucleotidesShew_R0100 and Shew_2919 are separated by 266 nucleotidesShew_2919 and Shew_2920 are separated by 70 nucleotidesShew_2920 and Shew_2921 are separated by 103 nucleotides Shew_R0095: Shew_R0095 - tRNA-Leu (RefSeq), at 3,456,763 to 3,456,847 _R0095 Shew_R0096: Shew_R0096 - tRNA-Met (RefSeq), at 3,456,980 to 3,457,056 _R0096 Shew_R0097: Shew_R0097 - tRNA-Gln (RefSeq), at 3,457,077 to 3,457,151 _R0097 Shew_R0098: Shew_R0098 - tRNA-Gln (RefSeq), at 3,457,177 to 3,457,251 _R0098 Shew_R0099: Shew_R0099 - tRNA-Leu (RefSeq), at 3,457,300 to 3,457,384 _R0099 Shew_R0100: Shew_R0100 - tRNA-Met (RefSeq), at 3,457,454 to 3,457,530 _R0100 Shew_2919: Shew_2919 - translation-associated GTPase (RefSeq), at 3,457,797 to 3,458,888 _2919 Shew_2920: Shew_2920 - peptidyl-tRNA hydrolase (RefSeq), at 3,458,959 to 3,459,546 _2920 Shew_2921: Shew_2921 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq), at 3,459,650 to 3,460,843 _2921 Position (kb) 3457 3458 3459Strain fitness (log2 ratio) -3 -2 -1 0 1at 3458.088 kb on + strand, within Shew_2919at 3458.500 kb on + strand, within Shew_2919at 3458.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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3,458,088 + Shew_2919 0.27 -1.9
3,458,500 + Shew_2919 0.64 -2.4
3,458,828 - -3.0

Or see this region's nucleotide sequence