Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2790 and Shew_2791 are separated by 251 nucleotides Shew_2791 and Shew_2792 are separated by 62 nucleotides
Shew_2790: Shew_2790 - nucleoside recognition domain-containing protein (RefSeq), at 3,299,791 to 3,301,146
_2790
Shew_2791: Shew_2791 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,301,398 to 3,305,078
_2791
Shew_2792: Shew_2792 - phospholipid/glycerol acyltransferase (RefSeq), at 3,305,141 to 3,306,958
_2792
Position (kb)
3301
3302
3303
3304
3305
3306 Strain fitness (log2 ratio)
-2
-1
0
1 at 3300.486 kb on + strand, within Shew_2790 at 3300.679 kb on + strand, within Shew_2790 at 3301.450 kb on + strand at 3301.753 kb on - strand at 3302.077 kb on - strand, within Shew_2791 at 3302.077 kb on - strand, within Shew_2791 at 3302.696 kb on + strand, within Shew_2791 at 3302.843 kb on - strand, within Shew_2791 at 3302.985 kb on + strand, within Shew_2791 at 3303.217 kb on + strand, within Shew_2791 at 3303.597 kb on - strand, within Shew_2791 at 3303.771 kb on + strand, within Shew_2791 at 3303.794 kb on + strand, within Shew_2791 at 3303.895 kb on + strand, within Shew_2791 at 3304.104 kb on - strand, within Shew_2791 at 3304.263 kb on - strand, within Shew_2791 at 3304.436 kb on - strand, within Shew_2791 at 3304.555 kb on + strand, within Shew_2791 at 3304.581 kb on - strand, within Shew_2791 at 3304.732 kb on + strand at 3305.412 kb on + strand, within Shew_2792 at 3305.910 kb on - strand, within Shew_2792
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 3,300,486 + Shew_2790 0.51 -0.6 3,300,679 + Shew_2790 0.65 +0.8 3,301,450 + -1.0 3,301,753 - +0.6 3,302,077 - Shew_2791 0.18 -1.8 3,302,077 - Shew_2791 0.18 +0.3 3,302,696 + Shew_2791 0.35 +0.5 3,302,843 - Shew_2791 0.39 -0.1 3,302,985 + Shew_2791 0.43 -2.1 3,303,217 + Shew_2791 0.49 +1.2 3,303,597 - Shew_2791 0.60 -2.1 3,303,771 + Shew_2791 0.64 +0.4 3,303,794 + Shew_2791 0.65 +1.4 3,303,895 + Shew_2791 0.68 +1.0 3,304,104 - Shew_2791 0.74 -0.5 3,304,263 - Shew_2791 0.78 -0.5 3,304,436 - Shew_2791 0.83 -0.2 3,304,555 + Shew_2791 0.86 +1.3 3,304,581 - Shew_2791 0.86 +0.5 3,304,732 + -2.7 3,305,412 + Shew_2792 0.15 +0.7 3,305,910 - Shew_2792 0.42 -1.2
Or see this region's nucleotide sequence