Strain Fitness in Shewanella loihica PV-4 around Shew_2572

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2571 and Shew_2572 are separated by 48 nucleotidesShew_2572 and Shew_2573 are separated by 57 nucleotides Shew_2571: Shew_2571 - propionyl-CoA carboxylase (RefSeq), at 3,029,723 to 3,031,330 _2571 Shew_2572: Shew_2572 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,031,379 to 3,032,179 _2572 Shew_2573: Shew_2573 - carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq), at 3,032,237 to 3,034,270 _2573 Position (kb) 3031 3032 3033Strain fitness (log2 ratio) -2 -1 0 1at 3030.413 kb on + strand, within Shew_2571at 3030.616 kb on - strand, within Shew_2571at 3031.040 kb on - strand, within Shew_2571at 3031.249 kb on - strandat 3031.425 kb on - strandat 3031.542 kb on + strand, within Shew_2572at 3031.857 kb on + strand, within Shew_2572at 3032.292 kb on + strandat 3032.310 kb on - strandat 3032.310 kb on - strandat 3032.676 kb on - strand, within Shew_2573at 3032.825 kb on + strand, within Shew_2573

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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3,030,413 + Shew_2571 0.43 +0.0
3,030,616 - Shew_2571 0.56 +0.4
3,031,040 - Shew_2571 0.82 +0.2
3,031,249 - -0.2
3,031,425 - +0.1
3,031,542 + Shew_2572 0.20 -1.7
3,031,857 + Shew_2572 0.60 -2.6
3,032,292 + +0.5
3,032,310 - -0.7
3,032,310 - -0.6
3,032,676 - Shew_2573 0.22 -0.6
3,032,825 + Shew_2573 0.29 -0.7

Or see this region's nucleotide sequence