Strain Fitness in Shewanella loihica PV-4 around Shew_2421

Experiment: Motility M4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility M4
2,842,530	-		Shew_2420	0.88	+4.1
2,842,655	-				+0.9
2,842,843	-				+0.8
2,842,857	+				-0.6
2,842,947	+				-0.0
2,842,955	-				-0.1
2,843,040	-				+0.4
2,843,052	+				-2.9
2,843,060	-				+1.0
2,843,113	+				-2.1
2,843,189	-				+0.5
2,843,264	+				-2.2
2,843,266	+				-0.3
2,843,278	+				-1.3
2,843,291	-				-2.0
2,843,309	+				+0.7
2,843,309	+				-1.1
2,843,319	+				-0.7
2,843,319	+				-3.9
2,843,327	-				-1.1
2,843,477	+				-2.2
2,843,487	+				-5.1
2,843,501	+				-1.9
2,843,501	+				-6.3
2,843,501	+				-5.9
2,843,516	-				-1.6
2,843,517	+				-2.3
2,843,517	+				-5.1
2,843,525	-				-6.3
2,843,551	+				-4.2
2,843,554	-				-4.0
2,843,587	-				-5.4
2,843,589	+				-5.5
2,843,606	+				-4.5
2,843,608	+				-2.6
2,843,609	-				-3.3
2,843,610	+				-3.3
2,843,610	+				-6.4
2,843,614	-				-4.9
2,843,614	-				-4.6
2,843,616	-				-6.9
2,843,617	+				-2.6
2,843,618	-				-4.5
2,843,618	-				-4.9
2,843,618	-				-5.2
2,843,618	-				-1.9
2,843,619	-				-5.0
2,843,631	+				-5.5
2,843,668	+				-6.9
2,843,676	-				-5.5
2,843,715	+				-6.7
2,843,715	+				-6.4
2,843,715	+				-7.1
2,843,715	+				-4.4
2,843,715	+				-3.7
2,843,716	+				-5.4
2,843,716	+				-5.7
2,843,723	-				-4.8
2,843,723	-				-7.0
2,843,723	-				-4.0
2,843,723	-				-6.1
2,843,724	-				-4.6
2,843,724	-				-3.3
2,843,725	-				-5.1
2,843,737	+				-5.0
2,843,747	-				-2.6
2,843,754	-				-4.4
2,843,761	-				-4.8
2,843,764	-				-4.7
2,843,783	+				-6.1
2,843,783	+				-5.0
2,843,784	-				-5.4
2,843,784	-				-5.3
2,843,791	-				-3.0
2,843,793	+				-7.2
2,843,793	+				-5.0
2,843,793	+				-2.9
2,843,793	+				-4.7
2,843,793	+				-5.6
2,843,793	+				-9.0
2,843,793	+				-2.1
2,843,793	+				-6.0
2,843,793	+				-5.1
2,843,793	+				-6.9
2,843,793	+				-6.6
2,843,793	+				-6.3
2,843,793	+				-3.8
2,843,793	+				-5.9
2,843,793	+				-5.8
2,843,793	+				-5.0
2,843,793	+				-5.6
2,843,793	+				-3.4
2,843,793	+				-7.1
2,843,793	+				-3.1
2,843,793	+				-5.3
2,843,793	+				-3.1
2,843,793	+				-3.8
2,843,793	+				-6.2
2,843,793	+				-5.1
2,843,793	+				-2.2
2,843,793	+				-5.3
2,843,793	+				-2.8
2,843,793	+				-4.0
2,843,793	+				-6.5
2,843,793	+				-4.9
2,843,793	+				-5.7
2,843,793	+				-1.6
2,843,793	+				-8.2
2,843,793	+				-3.9
2,843,793	+				-6.5
2,843,793	+				-5.3
2,843,793	+				-5.6
2,843,793	+				-5.0
2,843,793	+				-5.0
2,843,793	+				-4.3
2,843,793	+				-7.1
2,843,793	+				-5.5
2,843,793	+				-0.3
2,843,793	+				-4.7
2,843,793	+				-4.1
2,843,799	+				-6.6
2,843,799	+				-4.9
2,843,799	+				-7.9
2,843,799	+				-6.1
2,843,799	+				-4.3
2,843,799	+				-5.3
2,843,799	+				-4.6
2,843,799	+				-4.5
2,843,799	+				-5.6
2,843,799	+				-5.9
2,843,799	+				-4.5
2,843,801	-				-5.6
2,843,801	-				-4.7
2,843,801	-				-4.7
2,843,801	-				-5.4
2,843,801	-				-6.8
2,843,801	-				-4.1
2,843,801	-				-5.4
2,843,801	-				-5.2
2,843,801	-				-6.0
2,843,801	-				-5.0
2,843,801	-				-5.0
2,843,801	-				-4.5
2,843,801	-				-2.7
2,843,801	-				-3.8
2,843,801	-				-4.4
2,843,801	-				-5.1
2,843,801	-				-3.8
2,843,801	-				-3.7
2,843,801	-				-4.2
2,843,801	-				-0.8
2,843,801	-				-6.9
2,843,801	-				-5.3
2,843,801	-				-3.2
2,843,801	-				-4.1
2,843,801	-				-6.9
2,843,801	-				-7.4
2,843,801	-				-2.9
2,843,801	-				-7.5
2,843,801	-				-5.2
2,843,801	-				-5.1
2,843,801	-				-4.7
2,843,801	-				-5.6
2,843,801	-				-4.5
2,843,801	-				-5.1
2,843,801	-				-4.0
2,843,801	-				-5.0
2,843,801	-				-5.5
2,843,801	-				-7.4
2,843,801	-				-4.7
2,843,801	-				-2.6
2,843,801	-				-2.2
2,843,801	-				-4.9
2,843,801	-				-3.4
2,843,801	-				-3.5
2,843,801	-				-4.3
2,843,801	-				-3.6
2,843,801	-				-4.5
2,843,801	-				-2.9
2,843,801	-				-4.1
2,843,807	-				-5.5
2,843,807	-				-3.8
2,843,807	-				-4.2
2,843,807	-				-2.5
2,843,807	-				-4.0
2,843,807	-				-3.5
2,843,807	-				-4.3
2,843,807	-				-5.4
2,843,807	-				-4.8
2,843,998	+		Shew_2421	0.13	-3.6
2,844,039	+		Shew_2421	0.14	-5.4
2,844,053	+		Shew_2421	0.14	-6.6
2,844,068	+		Shew_2421	0.15	-3.9
2,844,075	-		Shew_2421	0.15	-3.2
2,844,075	-		Shew_2421	0.15	-2.1
2,844,076	-		Shew_2421	0.15	-2.7
2,844,105	-		Shew_2421	0.16	-3.0
2,844,144	-		Shew_2421	0.16	-3.4
2,844,184	+		Shew_2421	0.17	-4.8
2,844,283	-		Shew_2421	0.20	-2.5
2,844,310	-		Shew_2421	0.20	-4.2
2,844,326	-		Shew_2421	0.21	-4.6
2,844,423	-		Shew_2421	0.23	-5.1
2,844,434	+		Shew_2421	0.23	-6.3
2,844,514	-		Shew_2421	0.25	-3.8
2,844,546	+		Shew_2421	0.26	-4.2
2,844,554	-		Shew_2421	0.26	-4.5
2,844,554	-		Shew_2421	0.26	-4.4
2,844,554	-		Shew_2421	0.26	-5.4
2,844,601	-		Shew_2421	0.27	-5.9
2,844,601	+		Shew_2421	0.27	-5.8
2,844,610	+		Shew_2421	0.27	-4.9
2,844,620	+		Shew_2421	0.28	-5.2
2,844,620	+		Shew_2421	0.28	-4.6
2,844,639	+		Shew_2421	0.28	-3.3
2,844,639	+		Shew_2421	0.28	-3.0
2,844,647	-		Shew_2421	0.28	-3.0
2,844,647	-		Shew_2421	0.28	-5.4
2,844,674	-		Shew_2421	0.29	-4.2
2,844,686	+		Shew_2421	0.29	-4.2
2,844,706	+		Shew_2421	0.30	-6.8
2,844,811	+		Shew_2421	0.32	-3.5
2,844,811	-		Shew_2421	0.32	-3.8
2,844,825	+		Shew_2421	0.32	-6.5
2,844,825	+		Shew_2421	0.32	-3.9
2,844,825	+		Shew_2421	0.32	-6.6
2,844,825	+		Shew_2421	0.32	-5.9
2,844,825	+		Shew_2421	0.32	-3.1
2,844,828	-		Shew_2421	0.32	-4.0
2,844,833	-		Shew_2421	0.32	-4.2
2,844,833	-		Shew_2421	0.32	-3.7
2,844,850	+		Shew_2421	0.33	-3.6
2,844,850	+		Shew_2421	0.33	-2.7
2,844,858	-		Shew_2421	0.33	-3.3
2,844,865	+		Shew_2421	0.33	-4.6
2,844,871	-		Shew_2421	0.33	-4.9
2,844,871	-		Shew_2421	0.33	-2.3
2,844,871	-		Shew_2421	0.33	-5.8
2,844,873	-		Shew_2421	0.33	-2.9
2,844,885	-		Shew_2421	0.34	-5.1
2,844,887	+		Shew_2421	0.34	-4.6
2,844,906	+		Shew_2421	0.34	-2.8
2,844,906	+		Shew_2421	0.34	-3.5
2,844,906	+		Shew_2421	0.34	-3.6
2,844,906	+		Shew_2421	0.34	-4.2
2,844,906	+		Shew_2421	0.34	-3.3
2,844,906	+		Shew_2421	0.34	-3.7
2,844,911	+		Shew_2421	0.34	-1.6
2,844,914	-		Shew_2421	0.34	-4.0
2,844,914	-		Shew_2421	0.34	-4.7
2,844,914	-		Shew_2421	0.34	-5.9
2,844,916	+		Shew_2421	0.34	-2.8
2,844,919	-		Shew_2421	0.34	-4.2
2,844,924	-		Shew_2421	0.35	-3.4
2,844,924	-		Shew_2421	0.35	-6.3
2,845,031	-		Shew_2421	0.37	-3.6
2,845,031	+		Shew_2421	0.37	-3.5
2,845,031	+		Shew_2421	0.37	-4.4
2,845,039	-		Shew_2421	0.37	-2.4
2,845,039	-		Shew_2421	0.37	-5.5
2,845,080	+		Shew_2421	0.38	-6.0
2,845,080	+		Shew_2421	0.38	-7.0
2,845,086	+		Shew_2421	0.38	-4.5
2,845,088	+		Shew_2421	0.38	-6.3
2,845,094	+		Shew_2421	0.39	-6.8
2,845,096	-		Shew_2421	0.39	-3.7
2,845,101	+		Shew_2421	0.39	-3.8
2,845,116	+		Shew_2421	0.39	-3.5
2,845,119	+		Shew_2421	0.39	-5.4
2,845,119	+		Shew_2421	0.39	-1.3
2,845,119	+		Shew_2421	0.39	-5.4
2,845,133	+		Shew_2421	0.39	-2.1
2,845,133	+		Shew_2421	0.39	-7.0
2,845,133	+		Shew_2421	0.39	-3.4
2,845,143	+		Shew_2421	0.40	-4.2
2,845,180	+		Shew_2421	0.40	-4.6
2,845,245	+		Shew_2421	0.42	-3.9
2,845,248	+		Shew_2421	0.42	-5.3
2,845,313	+		Shew_2421	0.44	-4.6
2,845,313	+		Shew_2421	0.44	-5.1
2,845,313	+		Shew_2421	0.44	-3.7
2,845,314	-		Shew_2421	0.44	-2.8
2,845,321	-		Shew_2421	0.44	-3.6
2,845,321	-		Shew_2421	0.44	-5.3
2,845,327	-		Shew_2421	0.44	-3.8
2,845,327	+		Shew_2421	0.44	-8.7
2,845,333	+		Shew_2421	0.44	-3.4
2,845,335	-		Shew_2421	0.44	-4.8
2,845,335	-		Shew_2421	0.44	-6.4
2,845,335	-		Shew_2421	0.44	-4.3
2,845,335	-		Shew_2421	0.44	-5.2
2,845,340	+		Shew_2421	0.44	-3.0
2,845,341	-		Shew_2421	0.44	-3.6
2,845,341	-		Shew_2421	0.44	-4.5
2,845,341	-		Shew_2421	0.44	-4.2
2,845,348	-		Shew_2421	0.44	-3.1
2,845,396	+		Shew_2421	0.46	-6.8
2,845,396	+		Shew_2421	0.46	-5.1
2,845,396	+		Shew_2421	0.46	-5.0
2,845,396	+		Shew_2421	0.46	-4.4
2,845,404	-		Shew_2421	0.46	-3.7
2,845,404	-		Shew_2421	0.46	-2.3
2,845,404	-		Shew_2421	0.46	-5.8
2,845,404	-		Shew_2421	0.46	-3.6
2,845,404	-		Shew_2421	0.46	-6.0
2,845,407	+		Shew_2421	0.46	-4.7
2,845,415	+		Shew_2421	0.46	-4.4
2,845,423	-		Shew_2421	0.46	-3.0
2,845,439	+		Shew_2421	0.46	-5.7
2,845,445	+		Shew_2421	0.47	-6.1
2,845,447	-		Shew_2421	0.47	-4.6
2,845,452	+		Shew_2421	0.47	-4.5
2,845,452	+		Shew_2421	0.47	-3.0
2,845,452	-		Shew_2421	0.47	-4.8
2,845,452	+		Shew_2421	0.47	-6.9
2,845,452	+		Shew_2421	0.47	-6.0
2,845,452	+		Shew_2421	0.47	-3.6
2,845,452	+		Shew_2421	0.47	-5.4
2,845,452	+		Shew_2421	0.47	-5.1
2,845,452	+		Shew_2421	0.47	-6.8
2,845,452	+		Shew_2421	0.47	-5.6
2,845,452	+		Shew_2421	0.47	-5.8
2,845,452	+		Shew_2421	0.47	-2.7
2,845,452	+		Shew_2421	0.47	-5.4
2,845,452	+		Shew_2421	0.47	-2.9
2,845,452	+		Shew_2421	0.47	-4.2
2,845,453	-		Shew_2421	0.47	-5.9
2,845,454	+		Shew_2421	0.47	-6.4
2,845,460	-		Shew_2421	0.47	-4.1
2,845,460	-		Shew_2421	0.47	-5.5
2,845,460	+		Shew_2421	0.47	-7.5
2,845,460	-		Shew_2421	0.47	-6.0
2,845,460	+		Shew_2421	0.47	-7.5
2,845,460	-		Shew_2421	0.47	-3.0
2,845,460	-		Shew_2421	0.47	-5.1
2,845,462	-		Shew_2421	0.47	-3.8
2,845,498	+		Shew_2421	0.48	-6.2
2,845,506	-		Shew_2421	0.48	-4.9
2,845,511	+		Shew_2421	0.48	-5.1
2,845,512	+		Shew_2421	0.48	-7.0
2,845,513	+		Shew_2421	0.48	-5.2
2,845,513	+		Shew_2421	0.48	-6.4
2,845,513	+		Shew_2421	0.48	-5.0
2,845,513	+		Shew_2421	0.48	-5.1
2,845,513	+		Shew_2421	0.48	-7.2
2,845,513	+		Shew_2421	0.48	-3.2
2,845,513	+		Shew_2421	0.48	-7.1
2,845,513	+		Shew_2421	0.48	-7.1
2,845,513	+		Shew_2421	0.48	-4.4
2,845,513	+		Shew_2421	0.48	-6.4
2,845,513	+		Shew_2421	0.48	-2.6
2,845,513	+		Shew_2421	0.48	-0.2
2,845,513	+		Shew_2421	0.48	-7.1
2,845,513	+		Shew_2421	0.48	-4.0
2,845,513	+		Shew_2421	0.48	-3.3
2,845,513	+		Shew_2421	0.48	-5.6
2,845,513	+		Shew_2421	0.48	-4.3
2,845,513	+		Shew_2421	0.48	-5.2
2,845,513	+		Shew_2421	0.48	-5.0
2,845,513	+		Shew_2421	0.48	-5.3
2,845,513	+		Shew_2421	0.48	-4.3
2,845,513	+		Shew_2421	0.48	-6.7
2,845,513	+		Shew_2421	0.48	-4.5
2,845,513	+		Shew_2421	0.48	-4.0
2,845,513	+		Shew_2421	0.48	-3.8
2,845,513	+		Shew_2421	0.48	-4.7
2,845,513	+		Shew_2421	0.48	-6.4
2,845,513	+		Shew_2421	0.48	-2.9
2,845,513	+		Shew_2421	0.48	-5.8
2,845,513	+		Shew_2421	0.48	-4.0
2,845,513	+		Shew_2421	0.48	-2.9
2,845,513	+		Shew_2421	0.48	-5.5
2,845,513	+		Shew_2421	0.48	-2.5
2,845,513	+		Shew_2421	0.48	-3.3
2,845,513	+		Shew_2421	0.48	-3.3
2,845,513	+		Shew_2421	0.48	-2.3
2,845,513	+		Shew_2421	0.48	-5.6
2,845,513	+		Shew_2421	0.48	-7.1
2,845,513	+		Shew_2421	0.48	-6.8
2,845,513	+		Shew_2421	0.48	-6.2
2,845,513	+		Shew_2421	0.48	-3.6
2,845,513	+		Shew_2421	0.48	-4.8
2,845,513	+		Shew_2421	0.48	-4.2
2,845,514	-		Shew_2421	0.48	-6.3
2,845,521	-		Shew_2421	0.48	-5.3
2,845,521	-		Shew_2421	0.48	-6.4
2,845,521	-		Shew_2421	0.48	-4.3
2,845,521	-		Shew_2421	0.48	-5.7
2,845,521	-		Shew_2421	0.48	-5.6
2,845,521	-		Shew_2421	0.48	-5.2
2,845,521	-		Shew_2421	0.48	-3.3
2,845,521	-		Shew_2421	0.48	-6.2
2,845,521	-		Shew_2421	0.48	-4.2
2,845,521	-		Shew_2421	0.48	-3.4
2,845,521	-		Shew_2421	0.48	-6.3
2,845,521	-		Shew_2421	0.48	-5.8
2,845,521	-		Shew_2421	0.48	-4.5
2,845,521	-		Shew_2421	0.48	-4.4
2,845,521	-		Shew_2421	0.48	-5.7
2,845,521	-		Shew_2421	0.48	-5.2
2,845,521	-		Shew_2421	0.48	-7.7
2,845,521	-		Shew_2421	0.48	-6.5
2,845,521	-		Shew_2421	0.48	-5.4
2,845,521	-		Shew_2421	0.48	-4.8
2,845,521	-		Shew_2421	0.48	-2.6
2,845,521	-		Shew_2421	0.48	-4.9
2,845,521	-		Shew_2421	0.48	-4.4
2,845,553	-		Shew_2421	0.49	-4.0
2,845,575	+		Shew_2421	0.50	-4.4
2,845,583	-		Shew_2421	0.50	-7.1
2,845,583	-		Shew_2421	0.50	-5.4
2,845,595	+		Shew_2421	0.50	-4.9
2,845,602	+		Shew_2421	0.50	-5.8
2,845,603	-		Shew_2421	0.50	-7.2
2,845,603	-		Shew_2421	0.50	-5.8
2,845,613	+		Shew_2421	0.51	-5.5
2,845,643	+		Shew_2421	0.51	-5.7
2,845,643	+		Shew_2421	0.51	-5.4
2,845,643	+		Shew_2421	0.51	-4.8
2,845,643	+		Shew_2421	0.51	-5.6
2,845,643	+		Shew_2421	0.51	-5.6
2,845,651	-		Shew_2421	0.51	-4.6
2,845,651	-		Shew_2421	0.51	-2.8
2,845,651	-		Shew_2421	0.51	-4.1
2,845,651	-		Shew_2421	0.51	-4.1
2,845,651	-		Shew_2421	0.51	-5.9
2,845,651	-		Shew_2421	0.51	-6.2
2,845,651	-		Shew_2421	0.51	-4.0
2,845,674	-		Shew_2421	0.52	-4.1
2,845,718	+		Shew_2421	0.53	-4.7
2,845,790	-		Shew_2421	0.55	-2.5
2,845,819	+		Shew_2421	0.55	-5.9
2,845,841	-		Shew_2421	0.56	-3.3
2,845,855	-		Shew_2421	0.56	-6.6
2,845,916	+		Shew_2421	0.58	-4.1
2,845,940	+		Shew_2421	0.58	-4.5
2,845,940	+		Shew_2421	0.58	-6.2
2,845,940	+		Shew_2421	0.58	-4.9
2,845,948	-		Shew_2421	0.58	-3.2
2,845,975	+		Shew_2421	0.59	-3.9
2,845,975	+		Shew_2421	0.59	-6.4
2,845,975	+		Shew_2421	0.59	-5.2
2,846,068	+		Shew_2421	0.61	-3.5
2,846,076	-		Shew_2421	0.61	-5.3
2,846,086	-		Shew_2421	0.61	-0.8
2,846,109	-		Shew_2421	0.62	-4.6
2,846,109	-		Shew_2421	0.62	-3.4
2,846,159	-		Shew_2421	0.63	-2.9
2,846,169	-		Shew_2421	0.63	-5.7
2,846,207	+		Shew_2421	0.64	-4.1
2,846,215	-		Shew_2421	0.64	-3.7
2,846,215	-		Shew_2421	0.64	-6.2
2,846,215	-		Shew_2421	0.64	-5.2
2,846,377	+		Shew_2421	0.68	-5.6
2,846,385	-		Shew_2421	0.68	-4.8
2,846,385	-		Shew_2421	0.68	-4.3
2,846,543	-		Shew_2421	0.72	-5.1
2,846,981	-		Shew_2421	0.82	-2.7
2,846,981	-		Shew_2421	0.82	-4.4
2,846,997	+		Shew_2421	0.83	-4.5
2,847,100	+		Shew_2421	0.85	-4.9
2,847,408	-				-5.3
2,847,408	+				-5.4
2,847,527	-				-5.6
2,848,360	-		Shew_2422	0.73	+0.1
2,848,621	-		Shew_2423	0.58	-0.4