Strain Fitness in Shewanella loihica PV-4 around Shew_2083

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2082 and Shew_2083 are separated by 25 nucleotidesShew_2083 and Shew_2084 are separated by 15 nucleotides Shew_2082: Shew_2082 - putative methyltransferase (RefSeq), at 2,408,450 to 2,409,442 _2082 Shew_2083: Shew_2083 - hypothetical protein (RefSeq), at 2,409,468 to 2,410,205 _2083 Shew_2084: Shew_2084 - gonadoliberin III-related protein (RefSeq), at 2,410,221 to 2,411,726 _2084 Position (kb) 2409 2410 2411Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2408.634 kb on + strand, within Shew_2082at 2409.254 kb on + strand, within Shew_2082at 2409.791 kb on + strand, within Shew_2083at 2410.077 kb on - strand, within Shew_2083at 2410.343 kb on - strandat 2410.343 kb on - strandat 2410.489 kb on - strand, within Shew_2084

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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2,408,634 + Shew_2082 0.19 -1.8
2,409,254 + Shew_2082 0.81 -0.1
2,409,791 + Shew_2083 0.44 -3.3
2,410,077 - Shew_2083 0.83 -5.2
2,410,343 - -4.3
2,410,343 - -3.1
2,410,489 - Shew_2084 0.18 -4.2

Or see this region's nucleotide sequence