Strain Fitness in Shewanella loihica PV-4 around Shew_2059

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2057 and Shew_2058 are separated by 159 nucleotidesShew_2058 and Shew_2059 are separated by 72 nucleotidesShew_2059 and Shew_R0071 are separated by 125 nucleotidesShew_R0071 and Shew_R0072 are separated by 31 nucleotidesShew_R0072 and Shew_R0073 are separated by 40 nucleotidesShew_R0073 and Shew_2060 are separated by 293 nucleotides Shew_2057: Shew_2057 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 2,375,454 to 2,377,643 _2057 Shew_2058: Shew_2058 - hypothetical protein (RefSeq), at 2,377,803 to 2,378,090 _2058 Shew_2059: Shew_2059 - hypothetical protein (RefSeq), at 2,378,163 to 2,378,651 _2059 Shew_R0071: Shew_R0071 - tRNA-Tyr (RefSeq), at 2,378,777 to 2,378,861 _R0071 Shew_R0072: Shew_R0072 - tRNA-Tyr (RefSeq), at 2,378,893 to 2,378,977 _R0072 Shew_R0073: Shew_R0073 - tRNA-Tyr (RefSeq), at 2,379,018 to 2,379,102 _R0073 Shew_2060: Shew_2060 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit (RefSeq), at 2,379,396 to 2,380,457 _2060 Position (kb) 2378 2379Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2377.802 kb on + strandat 2378.333 kb on - strand, within Shew_2059at 2378.371 kb on - strand, within Shew_2059at 2378.499 kb on - strand, within Shew_2059at 2378.569 kb on - strand, within Shew_2059at 2379.431 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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2,377,802 + -1.6
2,378,333 - Shew_2059 0.35 -2.8
2,378,371 - Shew_2059 0.43 -5.1
2,378,499 - Shew_2059 0.69 -3.4
2,378,569 - Shew_2059 0.83 -3.1
2,379,431 + -0.1

Or see this region's nucleotide sequence