Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1390 and Shew_1391 are separated by 7 nucleotides Shew_1391 and Shew_1392 are separated by 131 nucleotides Shew_1392 and Shew_1393 are separated by 30 nucleotides Shew_1393 and Shew_1394 overlap by 1 nucleotides
Shew_1390: Shew_1390 - CheW protein (RefSeq), at 1,599,526 to 1,600,515
_1390
Shew_1391: Shew_1391 - CheW protein (RefSeq), at 1,600,523 to 1,601,017
_1391
Shew_1392: Shew_1392 - hypothetical protein (RefSeq), at 1,601,149 to 1,601,556
_1392
Shew_1393: Shew_1393 - FlhB domain-containing protein (RefSeq), at 1,601,587 to 1,601,943
_1393
Shew_1394: Shew_1394 - hypothetical protein (RefSeq), at 1,601,943 to 1,604,096
_1394
Position (kb) 1601
1602 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1600.495 kb on + strand at 1600.584 kb on + strand, within Shew_1391 at 1600.874 kb on - strand, within Shew_1391 at 1601.011 kb on + strand at 1601.019 kb on - strand at 1601.204 kb on + strand, within Shew_1392 at 1601.505 kb on + strand, within Shew_1392 at 1601.513 kb on - strand, within Shew_1392 at 1601.513 kb on - strand, within Shew_1392 at 1601.585 kb on + strand at 1601.592 kb on - strand at 1601.854 kb on + strand, within Shew_1393 at 1602.194 kb on - strand, within Shew_1394 at 1602.289 kb on - strand, within Shew_1394
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 1,600,495 + -3.7 1,600,584 + Shew_1391 0.12 -3.9 1,600,874 - Shew_1391 0.71 -3.4 1,601,011 + -0.1 1,601,019 - -3.2 1,601,204 + Shew_1392 0.13 -1.4 1,601,505 + Shew_1392 0.87 -2.9 1,601,513 - Shew_1392 0.89 -3.1 1,601,513 - Shew_1392 0.89 -3.3 1,601,585 + -0.3 1,601,592 - -0.4 1,601,854 + Shew_1393 0.75 +0.6 1,602,194 - Shew_1394 0.12 +0.1 1,602,289 - Shew_1394 0.16 +0.0
Or see this region's nucleotide sequence