Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliI and Shew_1370 are separated by 29 nucleotides Shew_1370 and Shew_1371 are separated by 380 nucleotides Shew_1371 and fliL are separated by 99 nucleotides fliL and fliM are separated by 42 nucleotides
Shew_1369: fliI - flagellum-specific ATP synthase (RefSeq), at 1,578,763 to 1,580,103
fliI
Shew_1370: Shew_1370 - flagellar export protein FliJ (RefSeq), at 1,580,133 to 1,580,579
_1370
Shew_1371: Shew_1371 - flagellar hook-length control protein (RefSeq), at 1,580,960 to 1,582,666
_1371
Shew_1372: fliL - flagellar basal body-associated protein FliL (RefSeq), at 1,582,766 to 1,583,287
fliL
Shew_1373: fliM - flagellar motor switch protein FliM (RefSeq), at 1,583,330 to 1,584,355
fliM
Position (kb)
1580
1581
1582
1583 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 1580.254 kb on + strand, within Shew_1370 at 1580.598 kb on + strand at 1581.568 kb on + strand, within Shew_1371 at 1581.863 kb on + strand, within Shew_1371 at 1582.083 kb on + strand, within Shew_1371 at 1582.091 kb on - strand, within Shew_1371 at 1582.316 kb on + strand, within Shew_1371 at 1583.140 kb on - strand, within fliL at 1583.258 kb on + strand at 1583.368 kb on + strand at 1583.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 1,580,254 + Shew_1370 0.27 -4.6 1,580,598 + +1.0 1,581,568 + Shew_1371 0.36 -8.0 1,581,863 + Shew_1371 0.53 -6.6 1,582,083 + Shew_1371 0.66 -4.7 1,582,091 - Shew_1371 0.66 -0.8 1,582,316 + Shew_1371 0.79 -7.8 1,583,140 - fliL Shew_1372 0.72 -7.2 1,583,258 + +5.3 1,583,368 + -3.7 1,583,376 - -2.9
Or see this region's nucleotide sequence