Strain Fitness in Shewanella loihica PV-4 around Shew_1371

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliI and Shew_1370 are separated by 29 nucleotidesShew_1370 and Shew_1371 are separated by 380 nucleotidesShew_1371 and fliL are separated by 99 nucleotidesfliL and fliM are separated by 42 nucleotides Shew_1369: fliI - flagellum-specific ATP synthase (RefSeq), at 1,578,763 to 1,580,103 fliI Shew_1370: Shew_1370 - flagellar export protein FliJ (RefSeq), at 1,580,133 to 1,580,579 _1370 Shew_1371: Shew_1371 - flagellar hook-length control protein (RefSeq), at 1,580,960 to 1,582,666 _1371 Shew_1372: fliL - flagellar basal body-associated protein FliL (RefSeq), at 1,582,766 to 1,583,287 fliL Shew_1373: fliM - flagellar motor switch protein FliM (RefSeq), at 1,583,330 to 1,584,355 fliM Position (kb) 1580 1581 1582 1583Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 1580.254 kb on + strand, within Shew_1370at 1580.598 kb on + strandat 1581.568 kb on + strand, within Shew_1371at 1581.863 kb on + strand, within Shew_1371at 1582.083 kb on + strand, within Shew_1371at 1582.091 kb on - strand, within Shew_1371at 1582.316 kb on + strand, within Shew_1371at 1583.140 kb on - strand, within fliLat 1583.258 kb on + strandat 1583.368 kb on + strandat 1583.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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1,580,254 + Shew_1370 0.27 -4.6
1,580,598 + +1.0
1,581,568 + Shew_1371 0.36 -8.0
1,581,863 + Shew_1371 0.53 -6.6
1,582,083 + Shew_1371 0.66 -4.7
1,582,091 - Shew_1371 0.66 -0.8
1,582,316 + Shew_1371 0.79 -7.8
1,583,140 - fliL Shew_1372 0.72 -7.2
1,583,258 + +5.3
1,583,368 + -3.7
1,583,376 - -2.9

Or see this region's nucleotide sequence