Strain Fitness in Shewanella loihica PV-4 around Shew_1361

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1359 and Shew_1360 are separated by 27 nucleotidesShew_1360 and fliS are separated by 6 nucleotidesfliS and Shew_1362 are separated by 266 nucleotides Shew_1359: Shew_1359 - flagellar hook-associated 2 domain-containing protein (RefSeq), at 1,568,033 to 1,569,406 _1359 Shew_1360: Shew_1360 - hypothetical protein (RefSeq), at 1,569,434 to 1,569,754 _1360 Shew_1361: fliS - flagellar protein FliS (RefSeq), at 1,569,761 to 1,570,171 fliS Shew_1362: Shew_1362 - sigma-54 dependent trancsriptional regulator (RefSeq), at 1,570,438 to 1,571,871 _1362 Position (kb) 1569 1570 1571Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1568.853 kb on + strand, within Shew_1359at 1569.186 kb on + strand, within Shew_1359at 1569.872 kb on + strand, within fliSat 1569.872 kb on + strand, within fliSat 1570.141 kb on + strandat 1570.236 kb on - strandat 1570.705 kb on + strand, within Shew_1362

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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1,568,853 + Shew_1359 0.60 -7.1
1,569,186 + Shew_1359 0.84 -2.5
1,569,872 + fliS Shew_1361 0.27 -7.1
1,569,872 + fliS Shew_1361 0.27 -8.7
1,570,141 + -5.9
1,570,236 - +0.5
1,570,705 + Shew_1362 0.19 -5.2

Or see this region's nucleotide sequence