Strain Fitness in Shewanella loihica PV-4 around Shew_1230

Experiment: Motility M4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1229 and Shew_1230 are separated by 322 nucleotidesShew_1230 and Shew_1231 are separated by 434 nucleotides Shew_1229: Shew_1229 - hypothetical protein (RefSeq), at 1,428,580 to 1,429,197 _1229 Shew_1230: Shew_1230 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 1,429,520 to 1,430,029 _1230 Shew_1231: Shew_1231 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 1,430,464 to 1,431,057 _1231 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -3 -2 -1 0 1at 1428.879 kb on + strand, within Shew_1229at 1429.063 kb on + strand, within Shew_1229at 1429.298 kb on - strandat 1429.538 kb on + strandat 1429.642 kb on + strand, within Shew_1230at 1429.642 kb on + strand, within Shew_1230at 1429.845 kb on - strand, within Shew_1230at 1430.409 kb on + strandat 1430.614 kb on - strand, within Shew_1231at 1430.677 kb on - strand, within Shew_1231

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M4
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1,428,879 + Shew_1229 0.48 -1.3
1,429,063 + Shew_1229 0.78 -0.4
1,429,298 - -0.0
1,429,538 + -0.9
1,429,642 + Shew_1230 0.24 -2.3
1,429,642 + Shew_1230 0.24 -0.9
1,429,845 - Shew_1230 0.64 -3.1
1,430,409 + -0.9
1,430,614 - Shew_1231 0.25 +0.2
1,430,677 - Shew_1231 0.36 -1.2

Or see this region's nucleotide sequence