Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0895 and Shew_0896 are separated by 10 nucleotides Shew_0896 and Shew_0897 overlap by 1 nucleotides Shew_0897 and Shew_0898 are separated by 14 nucleotides
Shew_0895: Shew_0895 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,015,603 to 1,016,886
_0895
Shew_0896: Shew_0896 - two component transcriptional regulator (RefSeq), at 1,016,897 to 1,017,610
_0896
Shew_0897: Shew_0897 - hypothetical protein (RefSeq), at 1,017,610 to 1,018,011
_0897
Shew_0898: Shew_0898 - MltA-interacting MipA family protein (RefSeq), at 1,018,026 to 1,018,961
_0898
Position (kb)
1016
1017
1018 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1016.083 kb on + strand, within Shew_0895 at 1016.093 kb on + strand, within Shew_0895 at 1016.197 kb on + strand, within Shew_0895 at 1016.327 kb on + strand, within Shew_0895 at 1016.335 kb on - strand, within Shew_0895 at 1016.428 kb on - strand, within Shew_0895 at 1016.693 kb on + strand, within Shew_0895 at 1016.855 kb on + strand at 1016.867 kb on - strand at 1016.867 kb on - strand at 1017.316 kb on + strand, within Shew_0896 at 1017.406 kb on + strand, within Shew_0896 at 1017.406 kb on + strand, within Shew_0896 at 1017.414 kb on - strand, within Shew_0896 at 1017.414 kb on - strand, within Shew_0896 at 1017.414 kb on - strand, within Shew_0896 at 1017.414 kb on - strand, within Shew_0896 at 1017.414 kb on - strand, within Shew_0896 at 1017.414 kb on - strand, within Shew_0896 at 1017.484 kb on - strand, within Shew_0896 at 1017.775 kb on + strand, within Shew_0897 at 1017.851 kb on - strand, within Shew_0897 at 1018.024 kb on + strand at 1018.275 kb on + strand, within Shew_0898
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 1,016,083 + Shew_0895 0.37 +0.0 1,016,093 + Shew_0895 0.38 -0.2 1,016,197 + Shew_0895 0.46 -1.8 1,016,327 + Shew_0895 0.56 +1.0 1,016,335 - Shew_0895 0.57 -0.1 1,016,428 - Shew_0895 0.64 +1.2 1,016,693 + Shew_0895 0.85 +0.3 1,016,855 + +0.8 1,016,867 - +0.3 1,016,867 - -0.0 1,017,316 + Shew_0896 0.59 +5.5 1,017,406 + Shew_0896 0.71 +3.3 1,017,406 + Shew_0896 0.71 -1.4 1,017,414 - Shew_0896 0.72 +0.3 1,017,414 - Shew_0896 0.72 -1.3 1,017,414 - Shew_0896 0.72 -0.9 1,017,414 - Shew_0896 0.72 -0.9 1,017,414 - Shew_0896 0.72 -0.8 1,017,414 - Shew_0896 0.72 +0.5 1,017,484 - Shew_0896 0.82 +0.6 1,017,775 + Shew_0897 0.41 +1.9 1,017,851 - Shew_0897 0.60 +0.3 1,018,024 + -0.1 1,018,275 + Shew_0898 0.27 -2.4
Or see this region's nucleotide sequence