Experiment: Motility M4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0874 and Shew_0875 are separated by 86 nucleotides Shew_0875 and Shew_0876 are separated by 103 nucleotides Shew_0876 and apaH are separated by 104 nucleotides apaH and apaG are separated by 26 nucleotides
Shew_0874: Shew_0874 - dihydrofolate reductase (RefSeq), at 993,823 to 994,305
_0874
Shew_0875: Shew_0875 - hypothetical protein (RefSeq), at 994,392 to 994,784
_0875
Shew_0876: Shew_0876 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 994,888 to 996,912
_0876
Shew_0877: apaH - diadenosine tetraphosphatase (RefSeq), at 997,017 to 997,841
apaH
Shew_0878: apaG - ApaG (RefSeq), at 997,868 to 998,248
apaG
Position (kb) 994
995
996
997 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 994.458 kb on + strand, within Shew_0875 at 994.847 kb on + strand at 995.131 kb on - strand, within Shew_0876 at 995.705 kb on + strand, within Shew_0876 at 995.708 kb on - strand, within Shew_0876 at 996.115 kb on - strand, within Shew_0876 at 996.167 kb on + strand, within Shew_0876 at 996.312 kb on + strand, within Shew_0876 at 996.312 kb on + strand, within Shew_0876 at 997.140 kb on + strand, within apaH at 997.320 kb on - strand, within apaH at 997.448 kb on - strand, within apaH at 997.458 kb on - strand, within apaH at 997.615 kb on - strand, within apaH
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M4 remove 994,458 + Shew_0875 0.17 -1.1 994,847 + -2.4 995,131 - Shew_0876 0.12 -1.7 995,705 + Shew_0876 0.40 -4.2 995,708 - Shew_0876 0.40 -2.3 996,115 - Shew_0876 0.61 -1.4 996,167 + Shew_0876 0.63 -1.6 996,312 + Shew_0876 0.70 +0.4 996,312 + Shew_0876 0.70 -2.0 997,140 + apaH Shew_0877 0.15 -1.2 997,320 - apaH Shew_0877 0.37 -2.8 997,448 - apaH Shew_0877 0.52 -3.6 997,458 - apaH Shew_0877 0.53 -1.5 997,615 - apaH Shew_0877 0.72 -1.9
Or see this region's nucleotide sequence